Package: BiRewire
Version: 3.43.0
Date: 2022-02-10
Title: High-performing routines for the randomization of a bipartite
        graph (or a binary event matrix), undirected and directed
        signed graph preserving degree distribution (or marginal
        totals)
Maintainer: Andrea Gobbi <gobbi.andrea@mail.com>
Description: Fast functions for bipartite network rewiring through N
        consecutive switching steps (See References) and for the
        computation of the minimal number of switching steps to be
        performed in order to maximise the dissimilarity with respect
        to the original network. Includes functions for the analysis of
        the introduced randomness across the switching steps and
        several other routines to analyse the resulting networks and
        their natural projections. Extension to undirected networks and
        directed signed networks is also provided. Starting from
        version 1.9.7 a more precise bound (especially for small
        network) has been implemented. Starting from version 2.2.0 the
        analysis routine is more complete and a visual montioring of
        the underlying Markov Chain has been implemented. Starting from
        3.6.0 the library can handle also matrices with NA (not for the
        directed signed graphs). Since version 3.27.1 it is possible to
        add a constraint for dsg generation: usually positive and
        negative arc between two nodes could be not accepted.
License: GPL-3
Depends: igraph, slam, Rtsne, Matrix
Suggests: RUnit, BiocGenerics
Author: Andrea Gobbi [aut], Francesco Iorio [aut], Giuseppe Jurman
        [cbt], Davide Albanese [cbt], Julio Saez-Rodriguez [cbt].
URL: http://www.ebi.ac.uk/~iorio/BiRewire
biocViews: Network
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:16:24 UTC
RemoteUrl: https://github.com/bioc/BiRewire
RemoteRef: HEAD
RemoteSha: 0a52927cd0b2f24ec29bad0031448141863628ee
NeedsCompilation: yes
Packaged: 2026-01-09 21:36:34 UTC; root
Built: R 4.6.0; x86_64-apple-darwin20; 2026-01-09 22:23:44 UTC; unix
