Predict Combined Function of Transcription Factors
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Documentation for package ‘target’ version 1.23.0
Help Pages
| target-package | 'target': Predict Combined Function of Transcription Factors. |
| associated_peaks | Predict associated peaks |
| direct_targets | Predict direct targets |
| find_distance | Find the distance between peaks and regions |
| merge_ranges | Merge peaks and regions GRanges |
| plot_predictions | Plot the ECDF of ranks by groups |
| rank_product | Calculate the regions rank products |
| real_peaks | AR peaks in LNCaP cell line |
| real_transcripts | Differential expression of DHT treated LNCaP cell line |
| score_peaks | Calculate peak scores |
| score_regions | Calculate region scores |
| sim_peaks | Simulated peaks |
| sim_transcripts | Simulated transcripts The transcripts chromosome 1 of the mm10 mouse genome with randomly singed statistics assigned to each. |
| target | 'target': Predict Combined Function of Transcription Factors. |
| target_app | Run the shiny App |
| test_predictions | Test the ECDF ranks of groups are from same distribution |