Detection of Differentially Methylated Regions

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Documentation for package ‘DMRScan’ version 1.31.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

DMRScan_package-package	DMRScan: An R-package for identification of Differentially Metylated Regions
dmrscan	DMR Scan function
DMRScan.methylationData	DMRScan
DMRScan.phenotypes	DMRScan
DMRScan_package	DMRScan: An R-package for identification of Differentially Metylated Regions
estimateThreshold	EstimateWindowThresholds
estimateWindowThreshold	EstimateWindowThresholds
makeCpGgenes	Cluster
makeCpGregions	Cluster
manyWindowSizeScanner	Method Fixed window size scan for a sequence of window sizes
manyWindowSizeScanner-method	Method Fixed window size scan for a sequence of window sizes
oneWindowSizeScanner	Method Fixed window size scan for one window size
oneWindowSizeScanner-method	Method Fixed window size scan for one window size
Rt	Method Fixed window size scan for one window size
Rt-method	Method Fixed window size scan for one window size
St	Method Fixed window size scan for a sequence of window sizes