An effective identification of alternative splicing events using junction arrays and RNA-Seq data

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Documentation for package ‘EventPointer’ version 3.19.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

AllEvents_RNASeq	Alternative splicing events detected by EventPointer
AllEvents_RNASeq_MP	Alternative splicing multi-path events detected by EventPointer
ArrayDatamultipath	Preprocessed arrays data with multi-path events
ArraysData	Preprocessed arrays data
CDFfromGTF	CDF file creation for EventPointer
CDFfromGTF_Multipath	CDF file creation for EventPointer (MultiPath)
CreateExSmatrix	Events X RBPS matrix creation
EventDetection	Detect splicing events using EventPointer methodology
EventDetectionAnn	Detect splicing events using EventPointer methodology
EventDetectionMultipath	Detect splicing multipath events using EventPointer methodology
EventDetection_transcriptome	EventDetection_transcriptome
EventPointer	EventPointer
EventPointerBAM_IGV	EventPointer RNASeq IGV Visualization
EventPointerStats_BAM	Statistical analysis of alternative splicing events from BAM files
EventPointer_Bootstraps	EventPointer_Bootstraps
EventPointer_IGV	EventPointer IGV Visualization
EventPointer_RNASeq	Statistical analysis of alternative splcing events for RNASeq data
EventPointer_RNASeq_TranRef	EventPointer_RNASeq_TranRef
EventPointer_RNASeq_TranRef_IGV	EventPointer RNASeq from reference transcriptome IGV Visualization
EventsDetection_BAM	Detection of alternative splicing events from BAM alignment files
Events_ReClassification	Events_ReClassification
EventXtrans	Relationship between isoforms and events.
FindPrimers	FindPrimers
Fit	Result of EventPointer_Bootstrap
getbootstrapdata	getbootstrapdata
GetPSI_FromTranRef	GetPSI_FromTranRef
getPSI_RNASeq_boot	getPSI_RNASeq_boot
MyPrimers	Data frame with primers design for conventional PCR
MyPrimers_taqman	Data frame with primers design for taqman PCR
PrepareBam_EP	Bam files preparation for EventPointer
Protein_Domain_Enrichment	Protein_Domain_Enrichment
PSIss	relationship between isoforms and events
PSI_boots	Bootstrap PSI values from BAM files
PSI_Statistic	PSI_Statistic
ResulTable	ResulTable
SF_Prediction	Splicing Factor Prediction
SG_reclassify	Splicing graph example for Events_ReClassification function
SG_RNASeq	Splicing graph elements predicted from BAM files
TxD	Transcript x Protein Domain matrix: small matrix for examples