ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition

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Documentation for package ‘ExCluster’ version 1.27.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ExCluster	ExCluster is the main function in this package, which clusters exon bins within each gene to determine signficiantly differentially expressed exon clusters.
GFF_convert	Flatten GTF files into GFF format
GRangesFromExClustResults	Converts ExCluster results data table to GRanges format.
plotExonlog2FC	The plotExonlog2FC function plots exon log2FC means and variances for significantly differentially expressed genes in ExCluster results.
processCounts	Counts reads per exon bin for each BAM file, using GFF exon annotations - also normalizes library sizes.