Automatic Statistical Identification in Complex Spectra

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Documentation for package ‘ASICS’ version 2.25.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

accessors-methods	Accessors
alignSpectra	Alignment
AnalysisResults-class	Class AnalysisResults
ASICS	Automatic Statistical Identification in Complex Spectra
ASICSResults-class	Class ASICSResults
ASICSUsersGuide	View ASICS User's Guide
binning	Binning/Bucketing of NMR spectra
c-method	Combine or subset functions
c.ASICSResults	Combine or subset functions
c.PureLibrary	Combine or subset functions
c.Spectra	Combine or subset functions
combineAndSubset-methods	Combine or subset functions
createPureLibrary	Create a pure library
createSpectra	Create a Spectra object
dim-method	Summary methods
dim.Spectra	Summary methods
formatForAnalysis	Format data for analysis
getBestModel	Accessors
getBestModel-method	Accessors
getCVError	Accessors
getCVError-method	Accessors
getDataset	Accessors
getDataset-method	Accessors
getDeformedLibrary	Accessors
getDeformedLibrary-method	Accessors
getMeanByGroup	Accessors
getMeanByGroup-method	Accessors
getNbProtons	Accessors
getNbProtons-method	Accessors
getNormMethod	Accessors
getNormMethod-method	Accessors
getNormParams	Accessors
getNormParams-method	Accessors
getPpmGrid	Accessors
getPpmGrid-method	Accessors
getQuantification	Accessors
getQuantification-method	Accessors
getReconstructedSpectra	Accessors
getReconstructedSpectra-method	Accessors
getResults	Accessors
getResults-method	Accessors
getSampleName	Accessors
getSampleName-method	Accessors
getSpectra	Accessors
getSpectra-method	Accessors
getTypeAnalysis	Accessors
getTypeAnalysis-method	Accessors
getTypeData	Accessors
getTypeData-method	Accessors
importSpectra	Import metabolomic spectra
importSpectraBruker	Import preprocessed metabolomic spectra from Bruker files
kruskalWallis	Kruskal-Wallis rank sum tests on a 'SummarizedExperiment' object
length-method	Summary methods
length.Spectra	Summary methods
normaliseSpectra	Normalisation
oplsda	Orthogonal projections to latent structures discriminant analysis (OPLS-DA) on a 'SummarizedExperiment' object
pca	Principal Component Analysis (PCA) on a 'SummarizedExperiment' object
plot-method	Visualisation methods
plot-method	Visualisation methods
plot.AnalysisResults	Visualisation methods
plot.ASICSResults	Visualisation methods
plot.Spectra	Visualisation methods
plotAlignment	Tile plot
PureLibrary-class	Class 'PureLibrary'
pure_library	Pure spectra library
show-method	Summary methods
show.AnalysisResults	Summary methods
show.ASICSResults	Summary methods
show.Spectra	Summary methods
simulate_spectra	Simulate a set of spectra
Spectra-class	Class Spectra
summary-method	Summary methods
summary-methods	Summary methods
summary.AnalysisResults	Summary methods
summary.Spectra	Summary methods
visualisation-methods-analyses	Visualisation methods
visualisation-methods-spectra	Visualisation methods
[-method	Combine or subset functions
[.ASICSResults	Combine or subset functions
[.PureLibrary	Combine or subset functions
[.Spectra	Combine or subset functions