MSMB 1.26.0
(Online version of the book)[https://www.huber.embl.de//msmb]
library("MSMB")
## Loading required package: tibble
dir(system.file("extdata", package = "MSMB"))
## [1] "01126211_NB8_I025.fcs" "01247181_NB06_I025.fcs" "02276161_NB8_I025.fcs"
## [4] "03157141_NB06_I025.fcs" "05107251_NB06_I025.fcs" "06226101_NB8_I025.fcs"
## [7] "07115141_NB8_I025.fcs" "07215281_NB8_I025.fcs" "08045071_NB8_I025.fcs"
## [10] "09225121_NB8_I025.fcs" "10175181_NB8_I025.fcs" "10276181_NB8_I025.fcs"
## [13] "11145351_NB8_I025.fcs" "12015151_NB8_I025.fcs" "PaintedTurtles.txt"
## [16] "annotation.txt" "statecancerdeaths.csv"
dir(system.file("images", package = "MSMB"))
## [1] "hiv.png" "image-Cy3.tif" "image-DAPI.tif" "image-FITC.tif"
## [5] "mosquito.png"
dir(system.file("data", package = "MSMB"))
## [1] "brcalymphnode.RData" "ukraine_coords.RData" "ukraine_dists.RData"
dir(system.file("scripts", package = "MSMB"))
## [1] "ukraine-dists.R"
sessionInfo()
## R version 4.5.0 RC (2025-04-04 r88126)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.2 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.21-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] MSMB_1.26.0 tibble_3.2.1 BiocStyle_2.36.0
##
## loaded via a namespace (and not attached):
## [1] digest_0.6.37 R6_2.6.1 bookdown_0.43
## [4] fastmap_1.2.0 xfun_0.52 magrittr_2.0.3
## [7] glue_1.8.0 cachem_1.1.0 knitr_1.50
## [10] pkgconfig_2.0.3 htmltools_0.5.8.1 rmarkdown_2.29
## [13] lifecycle_1.0.4 cli_3.6.4 vctrs_0.6.5
## [16] sass_0.4.10 jquerylib_0.1.4 compiler_4.5.0
## [19] tools_4.5.0 pillar_1.10.2 evaluate_1.0.3
## [22] bslib_0.9.0 yaml_2.3.10 BiocManager_1.30.25
## [25] jsonlite_2.0.0 rlang_1.1.6