"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","RDataPath","Tags"
"NRF1pair.bam","Bam file contanining reads covering example NRF1 pair binding locus used for SingleMoleculeFootprinting vignette","3.13","mm10","FASTA","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR407/004/ERR4078784/ERR4078784*,ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR407/005/ERR4078785/ERR4078785*",1,"Mus musculus","10090",FALSE,"Arnaud Krebs <arnaud.krebs@embl.de>","Guido Barzaghi <guido.barzaghi@embl.de>","character","FilePath","SingleMoleculeFootprintingData/NRF1pair.bam",""
"NRF1pair.bam.bai","Bam index file to Bam file used as example data in SingleMoleculeFootprinting vignette","3.13","mm10","FASTA","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR407/004/ERR4078784/ERR4078784*,ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR407/005/ERR4078785/ERR4078785*",1,"Mus musculus","10090",FALSE,"Arnaud Krebs <arnaud.krebs@embl.de>","Guido Barzaghi <guido.barzaghi@embl.de>","character","FilePath","SingleMoleculeFootprintingData/NRF1pair.bam.bai",""
"EnrichmentRegions_mm10.rds","GRanges obj of mouse genomic regions enriched for SMF signal in genome-wide capture experiments. Can be used to compute bait capture efficiency","3.13","mm10","FASTA","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR416/*",1,"Mus musculus","10090",FALSE,"Arnaud Krebs <arnaud.krebs@embl.de>","Guido Barzaghi <guido.barzaghi@embl.de>","GRanges","Rds","SingleMoleculeFootprintingData/EnrichmentRegions_mm10.rds",""
"ReferenceMethylation.rds","Reference matrix of genome-wide bulk SMF(%) values for published experiments in mouse cell lines","3.13","mm10","FASTA","ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR416/*",1,"Mus musculus","10090",FALSE,"Arnaud Krebs <arnaud.krebs@embl.de>","Guido Barzaghi <guido.barzaghi@embl.de>","matrix","Rds","SingleMoleculeFootprintingData/ReferenceMethylation.rds",""
"AllCs.rds","GRanges obj referencing the genomic context cytosines for mm10","3.13","mm10","FASTA","ftp://hgdownload.soe.ucsc.edu/goldenPath/mm10/chromosomes/*",1,"Mus musculus","10090",FALSE,"Arnaud Krebs <arnaud.krebs@embl.de>","Guido Barzaghi <guido.barzaghi@embl.de>","GRanges","Rds","SingleMoleculeFootprintingData/AllCs.rds",""
