yeastNagalakshmi
This is the released version of yeastNagalakshmi; for the devel version, see yeastNagalakshmi.
Yeast genome RNA sequencing data based on Nagalakshmi et. al.
Bioconductor version: Release (3.23)
The yeast genome data was retrieved from the sequence read archive, aligned with bwa, and converted to BAM format with samtools.
Author: Martin Morgan <mtmorgan at fhcrc.org>
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("yeastNagalakshmi")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("yeastNagalakshmi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | BiocViews, ChIPSeqData, ExperimentData, Genome, Saccharomyces_cerevisiae_Data, SequencingData |
| Version | 1.48.0 |
| License | Artistic-2.0 |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | ShortRead |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | yeastNagalakshmi_1.48.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/yeastNagalakshmi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/yeastNagalakshmi |
| Package Short Url | https://bioconductor.org/packages/yeastNagalakshmi/ |
| Package Downloads Report | Download Stats |