stemHypoxia
This is the released version of stemHypoxia; for the devel version, see stemHypoxia.
Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010)
Bioconductor version: Release (3.23)
Expression profiling using microarray technology to prove if 'Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium' by Prado-Lopez et al. (2010) Stem Cells 28:407-418. Full data available at Gene Expression Omnibus series GSE37761.
Author: Cristobal Fresno and Elmer A. Fernandez
Maintainer: Cristobal Fresno <cristobalfresno at gmail.com>
citation("stemHypoxia")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("stemHypoxia")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | CancerData, ExperimentData, GEO, Homo_sapiens_Data, MicroarrayData, StemCell, Tissue, TissueMicroarrayData |
| Version | 1.48.0 |
| License | GPL (>=2) |
| Depends | R (>= 2.14.1) |
| Imports | |
| System Requirements | |
| URL | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37761 http://onlinelibrary.wiley.com/doi/10.1002/stem.295/abstract |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | lmdme |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | stemHypoxia_1.48.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/stemHypoxia |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/stemHypoxia |
| Package Short Url | https://bioconductor.org/packages/stemHypoxia/ |
| Package Downloads Report | Download Stats |