msqc1
This is the released version of msqc1; for the devel version, see msqc1.
Sigma mix MSQC1 data
Bioconductor version: Release (3.23)
contains eight technical replicate data set and a three replicate dilution series of the MS Qual/Quant Quality Control Mix standard sample (Sigma-Aldrich, Buchs, Switzerland) measured on five different mass spectrometer platforms at the Functional Genomics Center Zurich.
Author: Tobias Kockmann [aut]
, Christian Trachsel [aut], Christian Panse [aut, cre]
Maintainer: Christian Panse <cp at fgcz.ethz.ch>
citation("msqc1")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("msqc1")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("msqc1")| ASMS 2016 poster (in portrait) abstract ID number: 282492 | R Script | |
| Introducing msqc1 - A Mass Spec Data set for Targeted Proteomics Performance Evaluation | HTML | R Script |
| LC Observations - Retention Time Stability | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, MassSpectrometryData, ReproducibleResearch |
| Version | 1.40.0 |
| License | GPL |
| Depends | R (>= 3.6), lattice, stats, utils |
| Imports | |
| System Requirements | |
| URL | https://panoramaweb.org/labkey/MSQC1.url http://fgcz-bfabric.uzh.ch/bfabric/project.html?projectId=1959 |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, specL(>= 1.2) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | CalibraCurve |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | msqc1_1.40.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/msqc1 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/msqc1 |
| Package Short Url | https://bioconductor.org/packages/msqc1/ |
| Package Downloads Report | Download Stats |