maqcExpression4plex
This is the released version of maqcExpression4plex; for the devel version, see maqcExpression4plex.
Sample Expression Data - MAQC / HG18 - NimbleGen
Bioconductor version: Release (3.23)
Data from human (HG18) 4plex NimbleGen array. It has 24k genes with 3 60mer probes per gene.
Author: NimbleGen Systems
Maintainer: Benilton Carvalho <Benilton.Carvalho at cancer.org.uk>
citation("maqcExpression4plex")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("maqcExpression4plex")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData |
| Version | 1.56.0 |
| License | GPL |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | oligo, pdInfoBuilder |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | oligo |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | maqcExpression4plex_1.56.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/maqcExpression4plex |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/maqcExpression4plex |
| Package Short Url | https://bioconductor.org/packages/maqcExpression4plex/ |
| Package Downloads Report | Download Stats |