TargetSearchData
This is the released version of TargetSearchData; for the devel version, see TargetSearchData.
Example GC-MS data for TargetSearch Package
Bioconductor version: Release (3.23)
Example files of GC-MS data for the TargetSearch Package. The package contains raw NetCDF files from a E.coli salt stress experiment, extracted peak lists, and sample metadata required for a GC-MS analysis. The raw data has been restricted for demonstration purposes.
Author: Alvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut]
Maintainer: Alvaro Cuadros-Inostroza <acuadros+bioc at gmail.com>
citation("TargetSearchData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TargetSearchData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TargetSearchData")| The TargetSearchData Package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Escherichia_coli_Data, ExperimentData |
| Version | 1.50.0 |
| License | GPL (>= 2) |
| Depends | |
| Imports | |
| System Requirements | |
| URL | https://github.com/acinostroza/TargetSearchData |
| Bug Reports | https://github.com/acinostroza/TargetSearchData/issues |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | TargetSearch |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TargetSearchData_1.50.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TargetSearchData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TargetSearchData |
| Package Short Url | https://bioconductor.org/packages/TargetSearchData/ |
| Package Downloads Report | Download Stats |