TCGAWorkflowData
This is the released version of TCGAWorkflowData; for the devel version, see TCGAWorkflowData.
Data for TCGA Workflow
Bioconductor version: Release (3.23)
This experimental data package contains 11 data sets necessary to follow the "TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages".
Author: Tiago Chedraoui Silva <tiagochst at gmail.com>
Maintainer: Tiago Chedraoui Silva <tiagochst at gmail.com>
citation("TCGAWorkflowData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TCGAWorkflowData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TCGAWorkflowData")| 'Example data for TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages' | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CancerData, ExperimentData, Homo_sapiens_Data, MicroarrayData |
| Version | 1.36.0 |
| License | GPL-3 |
| Depends | R (>= 3.5.0) |
| Imports | SummarizedExperiment |
| System Requirements | |
| URL | https://f1000research.com/articles/5-1542/v2 |
| Bug Reports | https://github.com/BioinformaticsFMRP/TCGAWorkflow/issues |
See More
| Suggests | knitr, rmarkdown, pander, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TCGAWorkflowData_1.36.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TCGAWorkflowData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TCGAWorkflowData |
| Package Short Url | https://bioconductor.org/packages/TCGAWorkflowData/ |
| Package Downloads Report | Download Stats |