SomatiCAData
This is the released version of SomatiCAData; for the devel version, see SomatiCAData.
An example cancer whole genome sequencing data for the SomatiCA package
Bioconductor version: Release (3.23)
An example cancer whole genome sequencing data for the SomatiCA package
Author: Mengjie Chen
Maintainer: Mengjie Chen <mengjie.chen at yale.edu>
citation("SomatiCAData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SomatiCAData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, Genome, SequencingData |
| Version | 1.50.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.14) |
| Imports | |
| System Requirements | |
| URL |
See More
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| Linking To | |
| Enhances | |
| Depends On Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SomatiCAData_1.50.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SomatiCAData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SomatiCAData |
| Package Short Url | https://bioconductor.org/packages/SomatiCAData/ |
| Package Downloads Report | Download Stats |