MUGAExampleData
This is the released version of MUGAExampleData; for the devel version, see MUGAExampleData.
Example {M}ouse {U}niversal {G}enotyping {A}rray data for genome reconstruction and quantitative trait locus mapping.
Bioconductor version: Release (3.23)
This package contains example data for the MUGA array that is used by the R package DOQTL.
Author: Daniel Gatti <Dan.Gatti at jax.org>
Maintainer: Daniel Gatti <Dan.Gatti at jax.org>
citation("MUGAExampleData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MUGAExampleData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MUGAExampleData")| User Manual | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, Mus_musculus_Data |
| Version | 1.32.0 |
| License | GPL-3 |
| Depends | R (>= 2.10.0) |
| Imports | |
| System Requirements | |
| URL |
See More
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MUGAExampleData_1.32.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MUGAExampleData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MUGAExampleData |
| Package Short Url | https://bioconductor.org/packages/MUGAExampleData/ |
| Package Downloads Report | Download Stats |