LiebermanAidenHiC2009
This is the released version of LiebermanAidenHiC2009; for the devel version, see LiebermanAidenHiC2009.
Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)
Bioconductor version: Release (3.23)
This package provides data that were presented in the article "Comprehensive mapping of long-range interactions reveals folding principles of the human genome", Science 2009 Oct 9;326(5950):289-93. PMID: 19815776
Author: Wolfgang Huber, Felix Klein
Maintainer: Felix Klein <fklein at embl.de>
citation("LiebermanAidenHiC2009")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LiebermanAidenHiC2009")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LiebermanAidenHiC2009")| Exploration of HiC data | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeqData, ChipOnChipData, DNASeqData, ENCODE, ExperimentData, GEO, Genome, NCI, SequencingData, SmallRNAData, miRNAData |
| Version | 0.50.0 |
| License | LGPL |
| Depends | KernSmooth, IRanges |
| Imports | |
| System Requirements | |
| URL |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | LiebermanAidenHiC2009_0.50.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/LiebermanAidenHiC2009 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LiebermanAidenHiC2009 |
| Package Short Url | https://bioconductor.org/packages/LiebermanAidenHiC2009/ |
| Package Downloads Report | Download Stats |