IlluminaDataTestFiles

This is the released version of IlluminaDataTestFiles; for the devel version, see IlluminaDataTestFiles.

Illumina microarray files (IDAT) for testing

Bioconductor version: Release (3.23)

Example data for Illumina microarray output files, for testing purposes

Author: Kasper Daniel Hansen, Mike L. Smith

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Citation (from within R, enter citation("IlluminaDataTestFiles")):

Seminal Bioconductor project articles:

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IlluminaDataTestFiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, MicroarrayData
Version	1.50.0
License	Artistic-2.0
Depends
Imports
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	illuminaio
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IlluminaDataTestFiles_1.50.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/IlluminaDataTestFiles
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IlluminaDataTestFiles
Package Short Url	https://bioconductor.org/packages/IlluminaDataTestFiles/
Package Downloads Report	Download Stats