COHCAPanno
This is the released version of COHCAPanno; for the devel version, see COHCAPanno.
Annotations for City of Hope CpG Island Analysis Pipeline
Bioconductor version: Release (3.23)
Provides genomic location, nearby CpG island and nearby gene information for common Illumina methylation array platforms
Author: Charles Warden
Maintainer: Charles Warden <cwarden45 at gmail.com>
citation("COHCAPanno")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("COHCAPanno")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("COHCAPanno")| COHCAPanno Vignette | R Script | |
| Reference Manual |
Details
| biocViews | ArrayExpress, CpGIslandData, ExperimentData, GEO, Homo_sapiens_Data, MethylationArrayData, MicroarrayData |
| Version | 1.48.0 |
| License | GPL-3 |
| Depends | R (>= 2.10) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | COHCAPanno_1.48.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/COHCAPanno |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/COHCAPanno |
| Package Short Url | https://bioconductor.org/packages/COHCAPanno/ |
| Package Downloads Report | Download Stats |