scAnnotatR.models
This is the released version of scAnnotatR.models; for the devel version, see scAnnotatR.models.
Pretrained models for scAnnotatR package
Bioconductor version: Release (3.23)
Pretrained models for scAnnotatR package. These models can be used to automatically classify several (immune) cell types in human scRNA-seq data.
Author: Vy Nguyen [aut]
, Johannes Griss [cre]
Maintainer: Johannes Griss <johannes.griss at meduniwien.ac.at>
citation("scAnnotatR.models")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scAnnotatR.models")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scAnnotatR.models")| 1. Introduction to scAnnotatR | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | AnnotationData, AnnotationHub, FunctionalAnnotation, Homo_sapiens |
| Version | 0.99.10 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | scAnnotatR, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scAnnotatR.models_0.99.10.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/scAnnotatR.models/ |
| Package Downloads Report | Download Stats |