org.Mxanthus.db
This is the released version of org.Mxanthus.db; for the devel version, see org.Mxanthus.db.
Genome wide annotation for Myxococcus xanthus DK 1622
Bioconductor version: Release (3.23)
Genome wide annotation for Myxococcus xanthus DK 1622, primarily based on mapping using Gene identifiers.
Author: Eduardo Illueca Fernández [aut, cre], Jesualdo Tomás Fernández-Breis [aut]
Maintainer: Eduardo Illueca Fernández <eduardo.illueca at um.es>
citation("org.Mxanthus.db")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("org.Mxanthus.db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("org.Mxanthus.db")| Genome wide annotation for Myxococcus xanthus DK 1622 | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, AnnotationHub, OrgDb |
| Version | 1.0.27 |
| License | Artistic-2.0 |
| Depends | R (>= 2.7.0), methods, AnnotationHub(>= 1.46.0), AnnotationDbi, BiocStyle |
| Imports | BiocFileCache(>= 1.10.1) |
| System Requirements | |
| URL |
See More
| Suggests | DBI, RUnit, clusterProfiler, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | org.Mxanthus.db_1.0.27.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/org.Mxanthus.db/ |
| Package Downloads Report | Download Stats |