gwascatData
This is the released version of gwascatData; for the devel version, see gwascatData.
A text file in cloud with March 30 2021 snapshot of EBI/EMBL GWAS catalog
Bioconductor version: Release (3.23)
This package manages a text file in cloud with March 30 2021 snapshot of EBI/EMBL GWAS catalog.This simplifies access to a snapshot of EBI GWASCAT. More current images can be obtained using the gwascat package.
Author: Sara Stankiewicz [aut, cre]
Maintainer: Sara Stankiewicz <sara.stankiewicz at channing.harvard.edu>
citation("gwascatData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gwascatData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gwascatData")| gwascatData -- a snapshot of the EBI/EMBL GWAS catalog | R Script | |
| Reference Manual |
Details
| biocViews | AnnotationData, AnnotationHub |
| Version | 0.99.6 |
| License | Artistic-2.0 |
| Depends | |
| Imports | data.table |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/stankiewicz565/gwascatData/issues |
See More
| Suggests | testthat, AnnotationHub, rmarkdown, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gwascatData_0.99.6.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/gwascatData/ |
| Package Downloads Report | Download Stats |