IlluminaHumanMethylationEPICmanifest
This is the released version of IlluminaHumanMethylationEPICmanifest; for the devel version, see IlluminaHumanMethylationEPICmanifest.
Manifest for Illumina's EPIC methylation arrays
Bioconductor version: Release (3.23)
A manifest package for Illumina's EPIC methylation arrays.
Author: Kasper Daniel Hansen [cre, aut]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
citation("IlluminaHumanMethylationEPICmanifest")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IlluminaHumanMethylationEPICmanifest")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, DNAMethylation, Homo_sapiens, IlluminaChip |
| Version | 0.3.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.0), minfi |
| Imports | |
| System Requirements | |
| URL | https://bitbucket.com/kasperdanielhansen/Illumina_EPIC |
| Bug Reports | https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | conumee, minfiDataEPIC |
| Imports Me | epimutacions, missMethyl |
| Suggests Me | shinyepico, wateRmelon, IlluminaHumanMethylationEPICv2manifest, FlowSorted.Blood.EPIC |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IlluminaHumanMethylationEPICmanifest_0.3.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/IlluminaHumanMethylationEPICmanifest/ |
| Package Downloads Report | Download Stats |