BSgenome.Carietinum.NCBI.v1
This is the released version of BSgenome.Carietinum.NCBI.v1; for the devel version, see BSgenome.Carietinum.NCBI.v1.
Cicer arietinum (Chickpea) full genome (NCBI version ASM33114v1)
Bioconductor version: Release (3.23)
Full genome sequences for Cicer arietinum (Chickpea) as provided by NCBI (ASM33114v1, Jan. 2013) and stored in Biostrings objects.
Author: Jose V. Die <jose.die at uco.es>
Maintainer: Jose V. Die <jose.die at uco.es>
citation("BSgenome.Carietinum.NCBI.v1")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BSgenome.Carietinum.NCBI.v1")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, BSgenome, Cicer_arietinum, Genetics |
| Version | 1.0.0 |
| License | GPL-3 |
| Depends | BSgenome(>= 1.42.0) |
| Imports | BSgenome |
| System Requirements | |
| URL |
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Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BSgenome.Carietinum.NCBI.v1_1.0.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/BSgenome.Carietinum.NCBI.v1/ |
| Package Downloads Report | Download Stats |