375c082c7c3eaf356a63c048b2a67d51 *DESCRIPTION
ea32000835f6d86ddc582c8b55301779 *LICENSE
a09f0109d5b6046c34dba2c96017c282 *NAMESPACE
eb7ebe91aaab14df9853c8086e8d9d71 *NEWS
5f26273aa7442cffab02651ae532c3ad *R/AllGenerics.R
7e6e07c75b6df1c1d6c83c405ba0ba85 *R/associationTest.R
02e4b1d168044969205d17effe43ea0e *R/clusterExpressionPatterns.R
7199d2d488576053fee6cf38f5df729e *R/conditionTest.R
3a1b2a463039253791a163feaa3f1dcc *R/data.R
97216d28fa5f10c87e7775c35a5d6224 *R/diffEndTest.R
486a7842e7671b5987d8c6ce87475e9a *R/earlyDETest.R
902d9ba01a48e6143ed92265a663903e *R/evaluateK.R
69d7718adf7b172b0b66fd7c821c9d98 *R/fitGAM.R
d739d3a4765ce0573997974788f39dd9 *R/getSmootherPvalues.R
257d116f677c6cb564f5edf90d4f5165 *R/getSmootherTestStats.R
fe9e87d9eb49719bf4d2359a0f74670c *R/nknots.R
6a48182fa41b54b4d226665879c8a8e0 *R/patternTest.R
5dc5f03298b0b81545501199a6272686 *R/plotGeneCount.R
35956639024fe99536f4796603e78e20 *R/plotSmoothers.R
b26f9bdee05d26cfff2b368c63439bf5 *R/predictCells.R
17188feeb2c6602ccc1c3c70c50a59c4 *R/predictSmooth.R
e45523d4966c6a1e58ed0d72f78f05ff *R/startVsEndTest.R
98d6f54130e9eaad4fdf28e091389165 *R/utils.R
bd7e6569609154a7af4587bbe2f640ac *README.md
daa26d16db33aa991426fa75852b1879 *build/vignette.rds
9a51c688976d9de70074e00ebeb89ce0 *data/celltype.rda
b3135d766a56a4c2ae39e317802297f2 *data/countMatrix.rda
3f9a961e42c65a3fedf67de0ffa67970 *data/crv.rda
6f87b05036a054bec41c08567dc842b3 *data/gamList.rda
61b2a4ef0e504946cab2fca7ad1fb803 *data/sds.rda
be6476b3d5da5b54fba3130eb5f2f153 *inst/CITATION
e432a7199192f119f96ca820eec53dc0 *inst/doc/Monocle.R
0844263a8635e6687b39e2a1fcef8711 *inst/doc/Monocle.Rmd
617d23c880db6e577db2605e8e73cd83 *inst/doc/Monocle.html
b9b72bea47fb1684944659eb016a5e20 *inst/doc/fitGAM.R
c4c0f848f9725be0eb62c6f5113ca183 *inst/doc/fitGAM.Rmd
92727e9be8fed15ecccee17e35092dbf *inst/doc/fitGAM.html
95325f5c9450faee29a18e67f4a9a145 *inst/doc/multipleConditions.Rmd
b7473f8815a6c467fcbebd8f441ab6a3 *inst/doc/multipleConditions.html
01065285f8cb4ce541573ca488c9ef1e *inst/doc/tradeSeq.R
5c7aa2b9b317516c5ee459119edf0053 *inst/doc/tradeSeq.Rmd
7d13e933b1025686aef0bceed0bf3496 *inst/doc/tradeSeq.html
f454af16ad680b3b8cfda9405cc45dfd *man/associationTest.Rd
1cfa426a985e4bb670c756d42e84f26a *man/celltype.Rd
63a9cb3ddaeaf639cf7a5f8045ce73e1 *man/clusterExpressionPatterns.Rd
b6116e156b41094bc389ef54b3fce919 *man/conditionTest.Rd
483e8ec7bb87fcd1752328789c8b4076 *man/countMatrix.Rd
30b58e2f942ce3d783799c8781ae3be3 *man/crv.Rd
b44847e027d0533ad437755c335f1fe7 *man/diffEndTest.Rd
ba287591fe687e0f30913e7a0717d42d *man/earlyDETest.Rd
a7d93a4315f275d612007c9b973b1102 *man/evaluateK.Rd
23a7233ec4560e584c926fabb8bf3b87 *man/fitGAM.Rd
13a8aaa6af4e96dabcf62e16d268d59c *man/gamList.Rd
8cf153c2a40d161d1368caddb48780a0 *man/getSmootherPvalues.Rd
c69948d9f97c169df7d8a4342825efd5 *man/getSmootherTestStats.Rd
997d972de64a2a9a8f7be2e803978561 *man/nknots.Rd
c452f0e5d871d966fd3f44d39fc2db3e *man/patternTest.Rd
88d09f0cba7b9abb121dedb4b28a3d39 *man/plotGeneCount.Rd
f4ae468d53b305eb1cd389d3a728966a *man/plotSmoothers.Rd
a6d7e80c8f69a20c5383b733f6aaf288 *man/plot_evalutateK_results.Rd
e9c19c318d721b616bf17f2508f732f9 *man/predictCells.Rd
e5e75d6a301de17e4805ffeabbbbd6ce *man/predictSmooth.Rd
0f3b719a7f767bba9fe7bdb6c566c309 *man/sds.Rd
f0c081241de632c8da8db6be33d1bace *man/startVsEndTest.Rd
eea79cefaeea443684023728e8212d83 *tests/testthat.R
687cde731d28287a20e3bd2855c67e24 *tests/testthat/Rplots.pdf
60848f43d0de33946365a550ecc2bcc5 *tests/testthat/testConditions.R
e761bf33d50e5c7c97d27c3be8eaacf2 *tests/testthat/testConsistentOutput.R
3e3be2f968d4a098eb2f98905e6b5fbf *tests/testthat/testDETestDetails.R
fd037bf6d873ffdb6709a689309c275f *tests/testthat/testFailures.R
97baae99c2f1101f0f5768021df57dcf *tests/testthat/testFoldChanges.R
47421403ab5315b7fd60331211ef16b8 *tests/testthat/testOneLineage.R
a3d6bbdae7ea2695a05725ebb0c1943c *tests/testthat/testPlots.R
6f0471e19983d2b47dc1ef2144408a4d *tests/testthat/testPredict.R
a6da61e5a14f2d423eb32d67aa0b5ee0 *tests/testthat/testThreeLineages.R
0844263a8635e6687b39e2a1fcef8711 *vignettes/Monocle.Rmd
2ca1f027b8d590470243619cf8edde91 *vignettes/cheatsheet_highRes.jpeg
cf4750e1f0e35f51b49e911ae471c772 *vignettes/evalK_paul.png
c4c0f848f9725be0eb62c6f5113ca183 *vignettes/fitGAM.Rmd
95325f5c9450faee29a18e67f4a9a145 *vignettes/multipleConditions.Rmd
5c7aa2b9b317516c5ee459119edf0053 *vignettes/tradeSeq.Rmd
55a21b571ec04f6324d66c15d2738887 *vignettes/tradeSeq.bib
