ea4d0d80b54a5f55774d48b1601e4c6c *DESCRIPTION
51cec4bc906f0de84d8820310ce93c7b *NAMESPACE
a2d4c1aeaf350223915bd6d74070463f *NEWS
d678076f3856ce91e476ccc45165924e *R/AllClasses.R
da05df708e8d50ee1ca982efa5d44b3c *R/AllGenerics.R
b2ae3da518cfb52e9184f50fc276a5ee *R/IR.R
6e80b41d86a1803181f8155b6bb86abb *R/RcppExports.R
2f1f750f20ceaacef31a04795df8cebf *R/helper.R
f18e055eaebaaee22f5096962de5fe50 *R/hmm.R
44a2923d044c0a49f9c53469f1616e5c *R/methods.R
ce255405385ff6680728d4174ca4675a *R/naive.R
308d807a01384b4c6e33c0cdc48f466a *R/plotRegions.R
e268035069fa340f78c11e6b4aa9bb7d *R/pvalues.R
12148983096325841c5a40816c0c1200 *R/readAnnot.R
1b56b36e0271a5350e89d2ce6cbae6cc *R/srnadiff-package.R
c6a37db0a01357aeeea39660984ea06f *R/srnadiff.R
4dc4460252e72f46cd189bb7c7f961bd *R/zzz.R
0628b1572dd38dc1c34e5bd24cc98616 *build/vignette.rds
363584146a7a364993af93d53647e25f *inst/CITATION
840dffa97e83163608b8b8636102a216 *inst/doc/srnadiff.R
bc45daf5f1a28f9df52675e19db6c974 *inst/doc/srnadiff.Rmd
552106706fc478bf909ed8ca92338e19 *inst/doc/srnadiff.html
e090879e0c57bf76f372d673e8f635df *inst/extdata/Homo_sapiens.GRCh38.76.gtf.gz
8b37b7c3d280af4e6996c62545e76ebb *inst/extdata/SRR1634756.bam
06296d541af2a4c1000be0110904d7d0 *inst/extdata/SRR1634757.bam
4680d7b9427067f7983ccf91c953cba6 *inst/extdata/SRR1634758.bam
cf7d16822f93d7271cebb9c79afef019 *inst/extdata/SRR1634759.bam
509af9418f5bd8117137b35bf28d5533 *inst/extdata/SRR1634760.bam
2d6e1690f1d420b68625dc2a60af0958 *inst/extdata/SRR1634761.bam
86f02e18ed4a6c7e973c0fd0d7414cd9 *inst/extdata/dataInfo.csv
8e0a594fd6d385d8f68273bc5ee6a46d *inst/extdata/header.sam
16513bd8fcc6eae52529d16288faa6db *inst/extdata/mirbase21_GRCh38.gff3
e9a2409240e822e32eff46e73392abbd *inst/extdata/srnadiffExample.rda
3c9a79bc5f76268449fc3b415e66c990 *inst/extdata/srnadiffProcessedExample.rda
d5c2788715257009b8fb85009b2615db *man/annotReg.Rd
01618ab44676d9c33c2abd9bc947f2d7 *man/bamFiles.Rd
2daa41b0860444eb1ea71d23547def0a *man/chromosomeSizes.Rd
6f340fa3b4dfda010a9792ceb855671d *man/countMatrix.Rd
69a51f62e470001b71b631130e96071a *man/coverages.Rd
9f4b394eb11883c681a108fa52990e0f *man/normFactors.Rd
10467e623115e15e258837741798c32e *man/parameters.Rd
9277e151b3907f80a99ff3eb3898f5f3 *man/plotRegions.Rd
ee148a6f7d12076fb7001c8ffad4c6b8 *man/readAnnotation.Rd
0910fe7018489b190806f57b681c21ab *man/regions.Rd
2704383ab47812e9d7a4c883423a34e6 *man/sampleInfo.Rd
cfbd724a76563c77f2e5c222b4e06e7d *man/srnadiff.Rd
7f09893712ce71163c762af48561c4e2 *man/srnadiffDefaultParameters.Rd
456de7476a8ea0971866598442720534 *man/srnadiffExample.Rd
9dc926957ace1e22a5bf814a530d2543 *man/srnadiffExp.Rd
d4f310686e7555302d5de1649b583eec *src/RcppExports.cpp
e7ba35f0f67c6e2808b11e8a5730ac37 *src/rcpp_hmm.cpp
1054d78f19314520ab72be80fadcc374 *src/rcpp_ir.cpp
0428a21565f69b836527122a06031081 *src/rcpp_main.cpp
d4b2040ef8a4d9e581647f3b4bb248be *src/rcpp_utils.cpp
26dd3d212dab0bc67ed1c9294a18fca1 *src/srnadiff_init.c
2bbb1c72d8959edb2431a126e8870558 *tests/testthat.R
22989ba5ee959b8523cc65e9c24f54ff *tests/testthat/test_AllClass.R
1bf93af51bed57b7850a89fb3c2e5aaa *tests/testthat/test_IR.R
957e34fcff879b13d864866bf3ca57cd *tests/testthat/test_annotation.R
acb973452f9b4f05ceb988e3f1ad736c *tests/testthat/test_hmm.R
e9c5501beb7af8f85d3369ab6cbf8296 *tests/testthat/test_plot.R
28f84c63779c84013722fdaef0b2bfba *tests/testthat/test_pvalues.R
6cdc4a846787eafe41c75d88d5947a39 *tests/testthat/test_srnadiff.R
c99041c6257d186709a74cc9544904c3 *vignettes/references.bib
bc45daf5f1a28f9df52675e19db6c974 *vignettes/srnadiff.Rmd
