4413f2636ad5bb6b401804fefa9ea1c2 *DESCRIPTION
7554fdb03b60e5f0af5eee756c556275 *LICENSE
fe2168f1186bcbc95ccbd56edcbaa680 *NAMESPACE
4e755caafd255e98284ce15a3a8e13d9 *NEWS
180de06e83f963889f7450c280891a7c *R/00_global.R
25a0577be70cc01d2460e12eb66f113b *R/RcppExports.R
fc014bc438c20b60aa31234b10b8f67e *R/anno_gene.R
7e769515d58894bdcfcd165460892c66 *R/annotation.R
b62831804f887d3ebe281d06cb2cb80a *R/common_ancestor.R
1a8c34e681b36eb1936061b44c68f8e3 *R/constructor.R
86abd2b2b2b23f5cf8400b8a9997ec89 *R/dist.R
2799946118b4d0ea3801c3dc0a8a119d *R/enrich.R
a8ef1b4159fcf13f6552a6620a358f72 *R/filter.R
3ae9f1d9fbabb728a9108d496a504136 *R/go.R
d98a8c402d16b49a2032527a160c0dca *R/group_sim.R
f9df9499486d55f45ac586daa7110f45 *R/import.R
dc0d3b63f1ede06a30d4ebc43abdda05 *R/methods.R
24f3d199fa5ac004f86c12523b691490 *R/partition.R
2b50c85ae878dabed90718b90c608580 *R/plot.R
dcf9ddff827624351d7e00205a45f7c2 *R/random.R
8a5cdcaac5393b24668f152642ee3aa8 *R/reorder.R
9c16800576e021fd122df632ac27a263 *R/shiny.R
7e336d61318ba6023dd119b5d8114957 *R/sim.R
63d96f99988e75fe90f7dadc7968c308 *R/term.R
979d9277fae1e7b332afd90d56403618 *R/transverse.R
7420a7f547e14dfe42a6666c45d3c286 *R/tree.R
d73844a34bce46e66c2d4431510a1514 *R/utils.R
2c821c9999ddae235e8280ec7b1df15e *R/zzz.R
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
986d6f59690ed69ae6d2a16bf3d8c406 *build/vignette.rds
5150a3c6c903663cd7eb492682e50c7b *inst/CITATION
160d4809d57c4c5b9b6dd7491e6430ff *inst/doc/simona.Rmd
432457a1f73dfe42fae064fe15db2b35 *inst/doc/simona.html
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ccc77bc381742c84dba5bfe906f9f869 *inst/extdata/app/app.R
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1d4dff629e8966dbed87b0139aacf9bd *inst/extdata/sig_go_ids.rds
651f0edfe4b61692c0bb58bfec2f25a7 *inst/extdata/sig_go_tb.rds
4bf7958f5e817240a8b97bd4a618ba73 *inst/scripts/download.R
71dcd081317e046d25fba23019b74a10 *inst/scripts/parse_ttl.pl
8a8c775dfe65c86bbb3f804cdb5ff923 *man/add_annotation.Rd
7c7a2513717606573f36b5422a25880e *man/all_methods.Rd
726b98246742e0411f1517653ba0e52a *man/annotation.Rd
ab35d48db61a132302b28e9081252144 *man/common_ancestor.Rd
b37363a33145e9f9ba098f4ee29e2e3a *man/create_ontology_DAG.Rd
70f8ea564b6b95d2b33ec59823c28441 *man/create_ontology_DAG_from_GO_db.Rd
5b4add88c9396b429e97688d4c1e6e53 *man/create_ontology_DAG_from_igraph.Rd
7a17922e39e6d126821caadaabe0d65e *man/dag_all_terms.Rd
fc1ee02e864d745cda28207403aa6204 *man/dag_as_igraph.Rd
2f1200716f83cf78165ad22ef422c238 *man/dag_depth.Rd
25ab966d3363432e9951fba802e9861e *man/dag_distinct_ancestors.Rd
f092191a11ac291cc975f3bc565ec7ec *man/dag_enrich_on_items.Rd
a9293cd7ac4ce1b8172cb333cd830172 *man/dag_enrich_on_offsprings.Rd
5939e04ab3569382eea7c98fac33b92e *man/dag_enrich_on_offsprings_by_permutation.Rd
88228eea76ac003f4474420b54848ba8 *man/dag_filter.Rd
9ff5b1d31bf27623952e984684619bf9 *man/dag_has_terms.Rd
1492d6b569deee1cb4e7492a829639aa *man/dag_longest_dist_to_offspring.Rd
b67c3a91016278a08928a884a9dcbe78 *man/dag_random.Rd
172932accd140b99fe5344c8bdee6900 *man/dag_reorder.Rd
e67a9e5499194c817c85f1d08175a52c *man/dag_root.Rd
65a9acf239e7e22527ccd23d5267548e *man/dag_shiny.Rd
49e2b991784b2301d454e275f387f62d *man/dag_terms.Rd
6826698ba8986554b54a37de310d8a9d *man/dag_treelize.Rd
81a08c70c227cf01e332f006b9de7785 *man/dag_viz.Rd
39de54d158e64b36274d19a7b4a59d65 *man/distance.Rd
b1926db03bacaa56dda115ddb0151229 *man/group_sim.Rd
3b1439b367ad60c9de42dcabf5898ba4 *man/import_obo.Rd
c5e4d3e766cf73b6cbbba94361aad6eb *man/mcols_ontology_DAG.Rd
88ad67633715e5becb810f4312733824 *man/method_param.Rd
78fbb97a5388728ea70590f8e0890fd5 *man/n_annotations.Rd
8fdf4d6785009ddcddb550d215040d8e *man/n_terms.Rd
c52943ec8ee9e28ac6543fa30740f79d *man/ontology.Rd
aeef5c2d31b1f5eb09576c8d1d627c64 *man/ontology_DAG-class.Rd
5fd069b453ee90fa49a735a9612630aa *man/partition_by_level.Rd
98bc26daef906bf424d93ac772e55086 *man/print.print_source.Rd
a12502145c0e065ff921551efe3312fe *man/random_terms.Rd
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df82cf654f7aca02efbf048c87ff7b5f *man/simona_opt.Rd
8729b93db58d876308860c8b889a8ec2 *man/subset.Rd
629edfef1097afa8f14dba2c1dec677e *man/term_IC.Rd
abbd028894c7737a1ce1976fd31cefe3 *man/term_sim.Rd
c573118db7f544eefaee5b82c5e04f9a *src/Makevars
c573118db7f544eefaee5b82c5e04f9a *src/Makevars.win
6cf06f9b6633e1e823aad92099d5f578 *src/RcppExports.cpp
7cb8b6f06e4e59dfa46b18f8a7fc8aa4 *src/annotation.cpp
4e8ec4d4e023549ef6a8a84a96efd3fb *src/common_ancestor.cpp
728d0c1709119fb89014790e5cee797d *src/common_ancestor.h
4ba39674f2a05e37dd6ff9c6270eed43 *src/dist.cpp
2500c972b944bde6ff8c14f1e58001fe *src/dist.h
090408cc5110352bd6a318ef822c909b *src/intersectToList_logical.cpp
48b462f9329303b3443cc47e530e1cbe *src/partition.cpp
351af650d2a8035d7d3c6d4521a82684 *src/permutation.cpp
2d5017f55f2c8260ffc39e0fa9433d5b *src/plot.cpp
4e5cc43239bb233f61ad30311c2fd93a *src/reorder.cpp
c50d464bf5fb4a82cbe6819d0836ae16 *src/sim.cpp
1fb222b733d70ba90fffb09137ee89a5 *src/term.cpp
ae916d191bc960feef912e6d1408ba69 *src/term.h
5493ee70a6d704665bc74a307115b032 *src/traverse.cpp
e0422aa5337c3403a250528bc92bb996 *src/traverse.h
4961400a4289de98256c928389335492 *src/tree.cpp
017e801733171b08f77acdd88d32874c *src/utils.cpp
5845b471fd53de55f2f7bfbb1fa1dc91 *src/utils.h
ad6530fcf4fc5c3db20a6806a83facac *tests/test-all.R
3f607731238ad274205f750ca272e026 *tests/testthat/tests_common_ancestor.R
4283453168ba9741f6acdaa0685f7e1f *tests/testthat/tests_constructor.R
059ae72be1731f070356589ee5fc88c1 *tests/testthat/tests_dist.R
6ab157e8650b3c23da945ee4ed53a975 *tests/testthat/tests_group_sim.R
0f1d97bbf952626a1b27e7265b7f8f9c *tests/testthat/tests_partition.R
278026ebebbdd12b19d83fafb924d055 *tests/testthat/tests_reorder.R
9c33aa1bf649449434d0266619aa6559 *tests/testthat/tests_sim.R
9f53d3ba1881119a61fe63a39c357ea9 *tests/testthat/tests_term.R
48c1382fd96c36bfc386be0ff6d53ba4 *tests/testthat/tests_transverse.R
427a6736988c781528b4bda62c314f10 *tests/testthat/tests_tree.R
02be7d83915b2b532235ca956afcae52 *tests/testthat/tests_utils.R
160d4809d57c4c5b9b6dd7491e6430ff *vignettes/simona.Rmd
