84845051592fd16830cb074d6d1ea41b *DESCRIPTION
159c31b90f1dac0298137486da2e0aee *LICENSE
6f67c0dbb4dd93751d66c24b7b14926b *NAMESPACE
8fdbd4aa6c77f0abe38502314ccc6b7a *NEWS
890caac9167d028fe086dd3775a76744 *R/HL_category.r
a6f4df248a7d2b03a3887e880ba27ab5 *R/Imports.r
f908aec4b9304a730b1da07fad0ca005 *R/adjusting_HLToInt.r
f3d945d533a91eec0098b750d54f4c8a *R/annotation_plot_comp.r
d5416ca4ddce1913d8146f61b41290be *R/data.r
1a808d855fd220f0032fbbea2ec7fdd0 *R/empty_data_negative.r
a704b25e43a84e0ca7dfb5567987771c *R/empty_data_positive.r
824e2db31af575e45a8454c75a97ec02 *R/figures_fun.r
b60de4955b26446d6a6cede06a56abec *R/fragment_HL.r
d5a2cd61c24e6506ba5b6be0380ed245 *R/fragment_HL_pen.r
fad565e5b82c4a144ae304f199ded7be *R/fragment_inty.r
d3144e45176957b201f48b6fb3acb276 *R/fragment_inty_pen.r
25d2be620a9ec17b721e1170ad3450d1 *R/fragmentation.r
7d16c89443d4afbf1ebc9e4be5ee1104 *R/function_df_summary.r
d9d1cd6aa1f19bcbaab1c79fe2596fe6 *R/functions_gff.r
648aa1e4ade231d04071ca9222d4e020 *R/functions_mean_distanceComp.r
1ca65b9eabf380b9727fc78f93c69305 *R/functions_visuali_condts.r
47d01770088099fef29133d44ca42ecf *R/gff3_preprocess.r
6c8110ec07a5319a5c1b9cdabcfdd153 *R/globals.r
fbbb83a6045a0d929c960b944fbc6fc8 *R/joining_data_column.r
bbbd758d15f79660d1f81df6260e1c4d *R/joining_data_row.r
6734ab6fd2cb0d0104e884fa15247d9c *R/loading_fun.r
fa7eebd5802ce0c3a7bb042dcf87e5e0 *R/make_pen.r
06e65d32eedd729ebce66b3739e432e2 *R/penalties.r
9a6250492a43d082094b5de512a17143 *R/plot_decay_synt.r
bc82089c4976d773e2e0010247b58163 *R/plot_density.r
7785d4cbef8fc3b75d9779cfc497d8e2 *R/plot_heatscatter.r
ffbcdcb52087f641fdd4d09479c9bc8b *R/plot_histogram.r
9303e6005cfbae4aa0f085b2263eaaac *R/plot_scatter.r
347ec61cef1bb19b618a2bfee8eb15fa *R/plot_volcano.r
6894d1deee4633228d55f660e61676e1 *R/rifiComparative.r
9e78a14075bff79b4dd87fae8839bd0a *R/rifi_visualization_comparison.r
4df744e9a2d348ba95c5a8f73acc7e44 *R/score_fun_ave.r
c9b7e15d0b27b4bc49b0adae678280b3 *R/statistics.r
535ee499a9caa5c93e01afbcab63c9fb *R/strand_function.r
0ab339ade8870cd68e9e08a1b2d21670 *R/t_test_function.r
fbeaa5745bf2061605866ed6476a592a *README.md
61051e15a778ec40f6fa206a17ba4bee *build/vignette.rds
6c51e2a7015c5052bc81e0318935c0bc *data/annot_g.rda
98981513f91d88ae9223489bdad6b7a9 *data/data_combined_minimal.rda
af09ec130b68b5a3830a55e5defa4549 *data/datalist
d9707bbdf7ef9bda8fb240c9a1c0a7bc *data/df_comb_minimal.rda
b8168f3e75f62eb159404bfe09d21797 *data/df_mean_minimal.rda
b135a6a55423ebf80d3ca80eaf60518c *data/differential_expression.rda
87819d6a85f01a9ce8f01569d927e23e *data/fragment_int.rda
efcddca99cad402210fbf495bfeba0ca *data/inp_f.rda
81ddff3e01f76aab7f9fb0e134b504d1 *data/inp_s.rda
5753a6eeede1bcf06530cef00e7fccb2 *data/pen_HL.rda
bfbfceafa7747023db0c01a9bef88b67 *data/pen_int.rda
d657173e3772a5a5141d7273e98f4564 *data/penalties_df.rda
2be410acd2f655df5674b299565af966 *data/stats_df_comb_minimal.rda
ee83cf0d209d90597962dadb39e168db *data/stats_se_cdt1.rda
4d50a2edd87b7f6ed44771a4bdf3f838 *data/stats_se_cdt2.rda
e7a6e1343c0efdd31868eec9cc229c08 *inst/doc/rifiComparative.R
77bcff66a9d9e56129d7975ddc39b00f *inst/doc/rifiComparative.Rmd
03d50d1deddef2404257efd6710301c2 *inst/doc/rifiComparative.html
658419146463eec3ddedcff187e30d01 *inst/extdata/gff_synechocystis_6803.gff.gz
05dafee366bb2471c82503bf85a6a500 *man/adjusting_HLToInt.Rd
708e94216616a31d207036a5df43261f *man/annot_g.Rd
24104cf62605faf3288e38a0c15e94fb *man/data_combined_minimal.Rd
0cf57c9007c9232c480031fe5462897e *man/df_comb_minimal.Rd
eb15eea804b9d82afb59e03b8330275c *man/df_mean_minimal.Rd
77015b7f8027ef7b327015801d0efec7 *man/differential_expression.Rd
6c0b35c1ab5d372d093d6ebf19dc1fad *man/figures_fun.Rd
03a25b7c3f95d9fc3a008e3c93f34eef *man/fragment_int.Rd
bccd1003da4e743eb21f383f53d9cccf *man/fragmentation.Rd
6e33b27b5b8dd8f4452d17b63cba3f77 *man/gff3_preprocess.Rd
b112cce7ce4ee2a860a3837de3cec1d6 *man/inp_f.Rd
7dfc1e6547ae8daa1b41f304a68a1c08 *man/inp_s.Rd
169f8be98f793769b5c13f243845dfb7 *man/joining_data_column.Rd
4030aa27e6e9d1e6339c7b79fee5c107 *man/joining_data_row.Rd
e2c79c410176cff204ae2922a838a9af *man/loading_fun.Rd
983bc0e95a78d8f061cdb400b8f04473 *man/make_pen.Rd
23c776a353e08869e2abdbbf10df1105 *man/pen_HL.Rd
2e14e30fbe66490a30d47c662a7d7d49 *man/pen_int.Rd
ecd94ddd411c6100152259a5a9002626 *man/penalties.Rd
87ed8cc8178ac60df8d8c19cd8932a09 *man/penalties_df.Rd
f8d9e0d4ca32682f1e11d443ab11ba6d *man/rifiComparative.Rd
5e42e348cf9bb91233566cd4456c1ef0 *man/rifi_visualization_comparison.Rd
44e17166fedb8a286ad7a2e96e4d305d *man/statistics.Rd
c3fb01b1e9d848f9572b42dfa1ae9159 *man/stats_df_comb_minimal.Rd
c42027f3bc9945efbc73ff7f5d0a1bea *man/stats_se_cdt1.Rd
67978dbc90939ca5f0c37398ed22224d *man/stats_se_cdt2.Rd
116b8a979d17805b6b20ec18449fe350 *vignettes/Decay_rate_vs_Synthesis_rate.png
c6f8e090ab9757a16143e0e616237d7c *vignettes/Half-life_Fragments_two_conditions.png
1ee8cb75e7e6003543ced72c8544b070 *vignettes/Half-life_difference.png
1345c00fb08b485eb21d597a77a0f9b6 *vignettes/adjusting_fragments.png
4867ab4fdda1b6487b48a6175f700efd *vignettes/density_HL.png
75e4990dd608a4c3d108b11a89b2e6da *vignettes/heatscatter_Decay_rate_vs_Synthesis_rate.png
c642666adfb069817aaa3f063b85c190 *vignettes/histogram_count.png
77bcff66a9d9e56129d7975ddc39b00f *vignettes/rifiComparative.Rmd
5106287e53b23e3dbf3a65e657199f3a *vignettes/rifiComparative_workflow.png
31999df0a928f67a23d74fd9dfff020c *vignettes/scatter_plot_HL.png
cc2812c7c58db1aa0e70552e70d5d206 *vignettes/visualization_cdts.png
a27f8218c5d29befdda8e2319d3155b4 *vignettes/volcano_plot.png
