ee54dca60322a7bb0d1088b54a82bba4 *DESCRIPTION
f8a7a173448c05cd4bb70c17ec7cdf69 *NAMESPACE
779266eeed66b3eb8b9a621c9b1a1a9f *R/annotation.R
5b9ef18268a1b03f174192d527eb5665 *R/argcheck.R
cfee2529fd065f367e7edbe7d920fd8a *R/count.R
cad6d4b032c496cf56e818f1c40af631 *R/coverage.R
c6228ffa415435de8ce5d49230602932 *R/plot.R
bb390906e6d48f366eeea267d742cdcb *R/profile.R
b5bd122383f65a7d37342cfee9b59a99 *R/query.R
e7fa79bf56d20c53ead03cd810a7c3f6 *R/ranges.R
aaa4f639709a8504cb263e494bcf6f4d *R/recoup.R
b512672ed3cd656dd266a1d49ce0080d *R/util.R
56dc6ba029ade819839c9f11d3c119fa *build/vignette.rds
2582bd5bc6ebacc799b70e7c4ddbebd5 *data/recoup_test_data.rda
327e3470002cdaee77988f4c1fd9e25b *inst/NEWS
d933f262f619f2f0dbfe035223e01468 *inst/doc/recoup_intro.R
d8d87a8b826cfd51bde7e59fa6537c06 *inst/doc/recoup_intro.Rmd
c7108d340b62413474171136fc3f49dd *inst/doc/recoup_intro.html
0570a742c0719f9c89fd542cd2a21f0e *inst/dummy.gtf
0f64c98b8f96fe0af0e39dd252cb7dc4 *inst/extdata/Set8KO_H4K20me1_50kr.bam
f569da454f34cc9b5d1713956b8c81ad *inst/extdata/WT_H4K20me1_50kr.bam
4190c9abfabdd73aa4f4206126e77728 *inst/unitTests/test_recoup.R
1ff322f22f5e1c03e6bb381a09448447 *man/buildAnnotationDatabase.Rd
5e539f46647dae3ce4495710c5ec78a8 *man/buildAnnotationStore.Rd
377486d332a0b2c95ed95d35f14dc81b *man/buildCustomAnnotation.Rd
e56e61c30dafb1e37c72bbe139c8b4c5 *man/calcCoverage.Rd
f59f2070170efd7bf5aa5628af9394e6 *man/coverageRef.Rd
414f902bf6fa3ef18fb57eabda2438e9 *man/coverageRnaRef.Rd
b7a055cd01ec1b802c2fc953a85f4d63 *man/getAnnotation.Rd
aa0e7689c6d72a3126565f9815822f42 *man/getBiotypes.Rd
7c3c6b32dff569c8e53452c710575c33 *man/getInstalledAnnotations.Rd
b9feb67e4688d336db721c1512619eeb *man/importCustomAnnotation.Rd
f3dc542a04eb9cd138374aa2d36c1850 *man/kmeansDesign.Rd
0dd9567c9587535fd6eadaa266a14986 *man/loadAnnotation.Rd
946dc583b70b59fb4cd7ae60248ee18a *man/mergeRuns.Rd
8dd559c2eca0b48b2d7c5d1fa24b3a4b *man/preprocessRanges.Rd
f8b6f1210f09c3b897204d66942e432a *man/profileMatrix.Rd
24bc352b3837162f4eab4e5a27eeaa23 *man/recoup-defunct.Rd
f12fbfe07135fd5a52cbadfa5fab8d53 *man/recoup-deprecated.Rd
c4443a525c3075d192a058923b3de039 *man/recoup.Rd
094422a29e883dd91e9aa441a8a06b42 *man/recoupCorrelation.Rd
0fa9fbc07a94ea8008a0beb5d3842d62 *man/recoupHeatmap.Rd
5d8abc89fabfcd86c7ce475b73fb36d1 *man/recoupPlot.Rd
aae72795eaac394747dd3ebca6f1698d *man/recoupProfile.Rd
1ff38bbd5e2e8b1d8a96dc817e7ced11 *man/recoup_test_data.Rd
7cfc1d0370629c43b3f7330c7880783f *man/removeData.Rd
dec1cc734babd0ed66c98e3de50cab17 *man/rpMatrix.Rd
04cef232d50178831733c8bb75befda7 *man/simpleGetSet.Rd
ff23545da5740f3034e40d3b7226cf70 *man/sliceObj.Rd
3c1f92738c5233b11499f35d0785dba7 *tests/runTests.R
d8d87a8b826cfd51bde7e59fa6537c06 *vignettes/recoup_intro.Rmd
