40313e893231beb6c69e11514d891fa6 *DESCRIPTION
ec88cd7b7845a7d384410dfa50b444bf *NAMESPACE
6041fbfb333ff584997fb5daeaed8132 *NEWS
59f2cfe5c1e7dd2a0226e6fa4caa0620 *R/AllClasses.R
693c26e9e031afe21a2303dc912ec9d1 *R/AllGenerics.R
be7740f1b08f2805358a9828d40c5a32 *R/Annotation.R
ae2cedd3ebc301f30bc67b2831861543 *R/Export.R
8b7b58cbaf83d7bf9338ce9a3abbd08c *R/FunctionInCommon.R
0594b389340ce9f5eded7b3d71dec8a0 *R/FunctionsForBatchAnalysis.R
68c98e9ab5f6c7b3e8ebcc71d9b6d1de *R/FunctionsForNoReplicationAnalysis.R
1923e0118aefd8585755fd59bb844a04 *R/Report.R
7fc2a170b3939bb6e3d695944e238bdb *R/RestrictionEnzymeFunctions.R
37bf0df75d9ef421304f9a56ee2b1acb *R/Visualize3Cseq.R
e03a40b7ac1ab92465cef8a65792166c *build/vignette.rds
88fed0aaa17bfbd7564ccc8e429626e7 *data/Myb_prom_FB.rdata
5622f00d5074ed07c8af5b33b41e1503 *data/Myb_prom_FL.rdata
52a721021182ebb14da491df1856be8b *data/datalist
9870e7cc7d5ed8d60d5543678c97889c *data/enzymeDb.rda
cd6ccb3fb2e1ba4ed3a9628ac72fdfdf *data/example.data.rda
da7401a9f454176dae910ad0b23289ae *data/hg18refGene.rdata
09edf039ae67ab8bf81df01b97f3531c *data/hg19refGene.rdata
06f99c8c120656f26e0d841b42aaa205 *data/mm10refGene.rdata
9ba6b8b24f8c48d5e26a5487071c97b5 *data/mm9refGene.rdata
eea3c3aa103b76923e4cac12a24d1306 *data/rn5refGene.rdata
02bda1feff8c916c57db5d3cb7d32a2e *inst/doc/r3Cseq.R
d91fc7d5c39e5d68757d2fa24f6dc499 *inst/doc/r3Cseq.Rnw
b4504a2011d348b8f9e5d4779239cc6f *inst/doc/r3Cseq.pdf
ff878d865a321b3c4238fb3680292764 *man/Myb_prom_FB.Rd
822cf10922682b34c32199917e93e1d2 *man/Myb_prom_FL.Rd
aed8c0f40e501aa4ac7ec89766ffa1b5 *man/calculateBatchRPM.Rd
4e388d40cbed459cc533f626069aff66 *man/calculateRPM.Rd
31f374383ce03b0badb428af8a2b17a8 *man/contrCoverage.Rd
b32801c763ad38bb1899225874ce6d25 *man/contrInteractionRegions.Rd
0183365fb1706a2a543595512e344565 *man/contrRPM.Rd
7de4e50f815aafc5b7c2bdc7fc5fc00a *man/contrRawData.Rd
fd5749f36d76b78734eeb91eb3caeed8 *man/contrReadCount.Rd
fc3fa4a2a3b3db3212ad8525d43d7ffd *man/enzymeDb.Rd
2c23fc894d4c204a8f87d8ced52e35d5 *man/expCoverage.Rd
9946242aae6b47cb2b1a676203da9b86 *man/expInteractionRegions.Rd
114e2d535401357296f18206e2866c4a *man/expRPM.Rd
8a1568513d616b1aaeb5343e461b7f1e *man/expRawData.Rd
1e80c6eaaa57a772334debddc34dbf57 *man/expReadCount.Rd
59f3224e065f22d6aac34a335cd6a8fa *man/export3Cseq2bedGraph.Rd
a7722a1e5e3c5df2a91d6d382451addc *man/export3CseqRawReads2bedGraph.Rd
079581f2a628fd59acd2a1140c582e35 *man/exportBatchInteractions2text.Rd
c81a02ea31a580614cdeb07ec5b1c972 *man/exportInteractions2text.Rd
4dab86f3c01160d693106b9c5cfd53f3 *man/generate3CseqReport.Rd
f8cfe1009ba304b69a2d3f06bf66249e *man/getBatchInteractions.Rd
b764eed6a718cf4e483316614c86dbd6 *man/getBatchRawReads.Rd
77c7beb25c0092df0f9ae1ecbb6e4565 *man/getBatchReadCountPerRestrictionFragment.Rd
d2bb404acab30fadc50182fff337309f *man/getBatchReadCountPerWindow.Rd
4f4e69b5dd17bcfa1ce1957646cb3473 *man/getContrInteractionsInRefseq.Rd
ff671acb40f4497ea3676ca94a8d49e5 *man/getCoverage.Rd
2147a05e92c9bb29e1c612dc639ad9d1 *man/getExpInteractionsInRefseq.Rd
2e4fe6755f995630c5d6f1b7ef0a0f7f *man/getInteractions.Rd
5197c3269e0ffec1986f188a48b4f4ca *man/getRawReads.Rd
38e03f0c1e3e66234fd750e7625d5a0a *man/getReadCountPerRestrictionFragment.Rd
5f19945cb5d20dc75a0a35057322e151 *man/getReadCountPerWindow.Rd
8e0893cd381caa5d3fe3540900b7b4c2 *man/getViewpoint.Rd
b82a13a8aaf54aa84592d07b425f2dbb *man/hg18refGene.Rd
deac29272f8f4344d2cf3bf7e6ac4d76 *man/hg19refGene.Rd
8b7f24c66a10f6801782d99bfc386727 *man/mm10refGene.Rd
1ae4f2a1b6ff8b64947d3001d5752643 *man/mm9refGene.Rd
43b811328cb0189c5c228f239e7d22f6 *man/plot3Cecdf.Rd
1082d53cf5d90c500feaaea1eb68edf1 *man/plotDomainogramNearViewpoint.Rd
f4a47623f793f4e211ba0fc978279eb1 *man/plotInteractionsNearViewpoint.Rd
ca74b76fc714a12def022584ee62a6d5 *man/plotInteractionsPerChromosome.Rd
4b2ba8a34b609a3baebb11c927366570 *man/plotOverviewInteractions.Rd
f38d9b3df381c853163521804e0c1c09 *man/r3Cseq-class.Rd
5eabc130d91d78d49f7babaef5160ae9 *man/r3CseqCommon-class.Rd
eaf503681b44555f2059040d77c68e59 *man/r3CseqInBatch-class.Rd
5da565452ede46ee0652da168ab809ee *man/rn5refGene.Rd
f7225909d5ed599667322f4c9bc8b641 *vignettes/images/3CseqProcedures.png
e4bb64d86115af093015bdccf36f51f6 *vignettes/images/r3CseqFlowChart.png
fffd3b294574d055ac8efbefa949d999 *vignettes/r3Cseq.Rmd
d91fc7d5c39e5d68757d2fa24f6dc499 *vignettes/r3Cseq.Rnw
83386e5cdf38ffb1b6a7ea34be960ad1 *vignettes/r3Cseq.bib
53605f32420f5610c0fb48b93abdbdaa *vignettes/r3Cseq.html
