571fa6a287c93483c3336316d70b597a *DESCRIPTION
af7f0a0762f2882944ebd800929bd588 *NAMESPACE
678be022b53ec14c647b14927d91f4f7 *NEWS
9c726026cd5ed519c5426d0f577e8ba8 *R/AllClasses.R
a291532267cfb1442fe893401dd203e0 *R/AllGenerics.R
5be9227aa4bec6570c3d617951b6e08f *R/calculate_distance.R
9613bb170cc16d4f49ea772d0b6da169 *R/completion.R
d0cd5612d6e3a92daf5ceb50252b94f2 *R/generate_synthetic_data.R
ee7dcc36bad66b283f560f13cda9a3ee *R/methods.R
cc3c456724dd624e5df01363592df641 *R/normalization.R
dbaa75e40c31e44c884b2188cfff2977 *R/pd_lm.R
f63d1104563c86a623512db1211c0c7f *R/predict.R
9146781608a1960973e7e4e103cdf952 *R/proDA.R
262a3595baf10721d616615423c3991d *R/simple_tests.R
a88b6f6e2f1bd4ae87cde9478ef22579 *R/stats_functions.R
3d6e955c82dbdbe990d609b3180a973f *R/test_diff.R
30d9d9ffd4cb5362398c733d1f487172 *R/util.R
6ab50610f4a6a94cf79319b243e8e5de *README.md
6f93e17f1c3237b9d95bf134bc1ee7a4 *build/vignette.rds
7f0e246828314c52c05b6d856e91c9b9 *inst/doc/Introduction.R
eb1511b85b9c6c721beb938368511f10 *inst/doc/Introduction.Rmd
b59d41f1cc850809d28546d79acb0d7e *inst/doc/Introduction.html
70b405bca948578b4fc0762508cecb2f *inst/doc/data-import.R
44607b451427c21687159d1f468ddedf *inst/doc/data-import.Rmd
a6a90f842212f59da391ae268ad39daf *inst/doc/data-import.html
d2db21f4a068cbafed831084f69835ff *inst/extdata/proteinGroups.txt
4a3e7bedf292342d94672c6fc927bb8a *inst/script/proteinGroups_information.txt
2c8ae44fb10b0d3ac6ad56fe64fc9725 *inst/site/build-site.R
61f4c6bf151e5eca68f46f9150a4ade7 *man/abundances.Rd
9eb4453ae9a372bc49c2517d23bdcad4 *man/accessor_methods.Rd
109b6f0b9ea2c41713c1b33177e3576b *man/as_replicate.Rd
ec8392734a745583a676f4caa47c1e8b *man/cash-proDAFit-method.Rd
dd15679d66126224fa2cf3c560a01e09 *man/coefficient_variance_matrices.Rd
5b0e28db9195cd3bde5a5dfc226f7417 *man/coefficients.Rd
abd45808bc6b511f1a7f5b455d32846d *man/convergence.Rd
c33f36fe12b7fbf7c9c02722800e8dc6 *man/dist_approx.Rd
25178b0555cd51e75ab45cf72c95c52c *man/dist_approx_impl.Rd
6749c99dbb04c030ef7633ba6b5070c0 *man/distance_sq.Rd
f0329c761c1cf7f7f3426aece026dccf *man/feature_parameters.Rd
a2e9208207718b79cdaca3a0aa2ab767 *man/generate_synthetic_data.Rd
d8838d6a332787532d80b18f64de6c38 *man/grapes-zero_dom_mat_mult-grapes.Rd
42a6956d0d2bae3b9925bc826b23e74e *man/hyper_parameters.Rd
15f2f4082db2d684129250813d3cbdb8 *man/invprobit.Rd
b86765888c31b3b540771dec0e2b585a *man/invprobit_fast.Rd
8e35422f180944285e46f2ccd1a205f3 *man/median_normalization.Rd
9c2e6fefd2d249b26d1b2760f319ae39 *man/mply_dbl.Rd
32e681551a3916eadb5ee3335ccd015e *man/pd_lm.Rd
3a9334e6d859794cbb4d2a37dc72a276 *man/pd_lm.fit.Rd
1f7798b629c8a9f8c7f5dcf933ae1c4d *man/pd_row_t_test.Rd
00d447b33ca072828ef5e5950580f8f5 *man/predict-proDAFit-method.Rd
be8feb57438ba5171e7a3260baf158e8 *man/proDA.Rd
c398596f1f3463be5e821e7e3c5fde52 *man/proDAFit-class.Rd
fd6bc3ffe698f2a62ffeabc524c3388c *man/proDA_package.Rd
485b64cd469ac518bd2e337a71e46385 *man/reference_level.Rd
8b9fa571375ae6561bb22912cd767260 *man/result_names.Rd
324fe68934d4cd04fe135e33e96e7d5d *man/test_diff.Rd
9c6f8864b0853f3c894b9e5bb10e6184 *tests/testthat.R
0a8e4acca37728b81d8a89d10f8286af *tests/testthat/test-calculate_distance.R
6561ba06275e3ab6e5ae829a15e641eb *tests/testthat/test-design_parsing.R
cafb638ae78ee99d23426e167648d1dd *tests/testthat/test-normalization.R
e7b55577e27cdb7e66bf0aab49abef25 *tests/testthat/test-pd_lm.R
7ec85ea94d18ec05a8e687a5c7532b32 *tests/testthat/test-proDA.R
d1d678e9f51e48a163c1d2ed090aa332 *tests/testthat/test-proDAFit_S4.R
76d105ed6825f4b9808dc527e1f83b5f *tests/testthat/test-test_diff.R
eb1511b85b9c6c721beb938368511f10 *vignettes/Introduction.Rmd
44607b451427c21687159d1f468ddedf *vignettes/data-import.Rmd
a71e73696978b381ee92f6b1201ca9e4 *vignettes/figures/README-protein_dist-1.png
574570121d5c6daf0e7c2a7b771cc74b *vignettes/figures/README-qc-mis_barplot-1.png
b5b086ce255d3ea580146adbe4da5bd9 *vignettes/figures/README-qc-raw_boxplot-1.png
2830b2550fd363799fecea11369e54d5 *vignettes/figures/README-sample_dist-1.png
26fd4a861b9e7e87e9679adba07ea0b8 *vignettes/figures/README-screenshot_fit_functions.png
