1a536620f14cfe83efb2abce8c0121ca *DESCRIPTION
a78d5cd552b4207b23693e88c2c7e713 *NAMESPACE
49bae2aa26fe08a6b1cfde5696fe1a18 *NEWS
b39fbe379b25a5546c1a043e765e00c6 *R/RcppExports.R
0a9c3757c1c3cd6ac4db41faf7ff7116 *R/affymetrix_quality_check.r
0bbac08d6aa80dd04bf181a2b09c3aa8 *R/biomart_available.r
05ec7383dfe3c41cc7d70caf8bf64221 *R/cancer_hallmarks.r
dc9bb9c2ba5b82cdbc67f71c89821510 *R/check_input_parameters.r
9b0159d9632ac426890ad803f965d52b *R/chromosome_expression_reports.r
a8f8bd880d9246ec65444f255ce0b0f9 *R/color_scheme.r
f47b5fca2a3d20da450a4f3fa2cdafd6 *R/detect_ensembl_dataset.r
119583ce5e0d4b317eed5fb40b7f89f5 *R/detect_spots_functions.r
c6d47d847a2ad8169176dd4b002dfa33 *R/detect_spots_modules.r
3638ba188d3e646abbf7907b13bf2290 *R/diffExpression_statistics.r
d8149c86f41749bd2a68663a722d50de *R/difference_analyses.r
7395891a15912ef7c7a854d43fe567f7 *R/entropy_profiles.r
12fc4552e5cd6f3296db10868698b227 *R/gene_lists.r
1948de99585b45763a83ff9cc7b8db7a *R/geneset_analysis.r
fa55668274858ed5be312ca6bc188b16 *R/geneset_overviews.r
fee22ddb47292c6a4f1da7cc5c0cee74 *R/geneset_profiles_and_maps.r
76fab42d1b30064266b1e38a0419cf45 *R/geneset_statistic_modules.r
db1aacb2b4fa6e02901c2f70e478978c *R/geneset_statistic_samples.r
ae34c0b0617c4eb470bc0da5bc2faea7 *R/get_running_average.r
75e598d28ba2608eafe5d790942afcad *R/get_statistic.r
ddc166bb55c1545b35a3a0d37e17e4cb *R/group_analyses.r
d00eccb68366f95a05729e31e412a58f *R/group_assignment.r
9366cf7023e8e1aef790602baf3156e2 *R/group_specific_genesets.r
f1d6fcba00a9af37646d8fc54714798a *R/heatmaps.r
f956cae224de1b749b277c04c1f14670 *R/html_differences_summary.r
d082f02bf80845a208a7a27ea9e9826e *R/html_geneset_analysis.r
caeb496613a0b21c489aa93688d79015 *R/html_group_summary.r
422af9c1f7146dcca9286c85bddae400 *R/html_module_summary.r
8ae0a17cf635161e8bc31a6e3814251a *R/html_psf_analysis.r
14817c85e2bde8941311ca1c81a8af4c *R/html_sample_summary.r
8bfaefcbb6405c07e24dd897835d5d3a *R/html_summary.r
815842f2f80efcc8cd45cc3dcf79c248 *R/module_correlation_map.r
4c6f9e4701f18b1e7833461c069ddcb0 *R/modules_CSV.r
1bb1b9c2362b3ca026cf109479995933 *R/modules_chromosomes.r
261f34de0fa55a4e9e580970e19700c3 *R/modules_profiles.r
b940db8c89d093dc655ea98245a696cd *R/modules_relations.r
e97edd58cf617e24c9a4bbf5e2cb2ec9 *R/modules_reports.r
a1b8200ea5321aab030015b0094893c8 *R/opossom.r
4b018a1cff98e9c35ec677c6e0aa95fd *R/pat_assignment.r
666becb4db4ffbea7be976c3d60b99f9 *R/prepare_annotation.r
40bafdd517a153bbab6ee0560183e4df *R/primary_analysis.r
ec7bfa4ad415a31ba6141434c5b45a66 *R/psf.analysis.r
c939b5b53adde42ad419f293220d0421 *R/psf.overview.heatmaps.r
d3a6308de8e00005b558b68028b34916 *R/psf.report.sheets.r
7d8fdc5831c6a14b55ad341012bcffd9 *R/quality_check.r
5fb6cf3946aad6aac4c8aff5a32ad713 *R/quantile_normalization.r
472f84e30cba6a56c96830c48d20cfc4 *R/radarchart.r
d7733f8b569c1e2bb35052856cd930f7 *R/sample_expression_portraits.r
8a99ba1b10f84681bb79848ef9162bb1 *R/sample_similarity_analysis_ED.r
e262731d6c984997e9a11cdd40d03e84 *R/sample_similarity_analysis_ICA.r
70c5d7f929537ddaac82cde540f5c817 *R/sample_similarity_analysis_SOM.r
681fd4a0d7d5c5537f4e5b19ca23e196 *R/sample_similarity_analysis_cor.r
490e9892be6b43f762b972acd2508f8c *R/som.linear.init.r
a7cc24aed6a5b4c06cc30d88af162de2 *R/som.training.r
9410b38e7e6baef2e4860b4a724a7c39 *R/spot_borders.r
5eff6557379025ada43e40b99f52e862 *R/summary_sheets_groups.r
25a33ca09538aab1b22e810fe119581e *R/summary_sheets_modules.r
70bbfcaafd46a37aa409d5f4b49446b7 *R/summary_sheets_pats.r
d116d6d6a2bf92fc9ab69a2dd4f6270c *R/summary_sheets_samples.r
402963dd0ec95cc4e2af4ea79c8d47dc *R/supporting_maps.r
56eaef1ebee637a54bb04a347d36a52d *R/topology_profiles.r
d32dfd2f5ab44bb022773ad32566fdba *R/util.r
af0214eb5e3047f9e8ab3580f72c4087 *R/workspace_check.r
2164ea8d7f4400db6198e95b6dd3ab1a *build/vignette.rds
ebd6ae93cb881bd6722e4f74caddfdc4 *data/datalist
1b2d946400f47db40701d5a4fbffbdb9 *data/hsa03320.RData
5922c729724e30abeec77a477605346b *data/hsa04010.RData
3e2b8ccb17bf27df995ba3b4d116b99d *data/hsa04012.RData
e2e2e8619c71168d4eb902140250d60d *data/hsa04014.RData
3c8345bf6f7f20cd12b8921401343dde *data/hsa04015.RData
b7ec39bb62781339002b411576a5371c *data/hsa04020.RData
4a6dfe980a4e405e893e75972736bf8e *data/hsa04022.RData
04ea4fa52c26c1f3b52547bb2ff97230 *data/hsa04024.RData
10470f56842baa6b1867da155c129295 *data/hsa04062.RData
fcb454490cd2247ba8694e3996fbd293 *data/hsa04064.RData
3f126b9b8691fa47e1cacb3addef9e4d *data/hsa04066.RData
bc2723f9b430164b6ecca95469394490 *data/hsa04068.RData
5fb2d3831635f3aa006e2a63fe144952 *data/hsa04070.RData
c14aec75fddd2f8ad89c292e83601258 *data/hsa04071.RData
f1dab37081d32e463392a7a7b5453606 *data/hsa04072.RData
474d465ab19e0d7849dd42f2d25f054b *data/hsa04115.RData
b9f298e01a9254b30d660c5903a3f443 *data/hsa04150.RData
7d63b4e59e92efd3a1f75b0fcad4804f *data/hsa04151.RData
ea75ccb3e947df99217ee44de8b6715a *data/hsa04152.RData
76d8f94cb939d674df048da2850c9b0f *data/hsa04261.RData
59216c183ba23cb38502d74efbb84d6a *data/hsa04310.RData
517916434fa27ef4e3590d8ddf038d98 *data/hsa04330.RData
14ba973b9905544c2d612d9b94355bac *data/hsa04340.RData
119b2fde117caa8dcd3ae8c8d33a6e75 *data/hsa04350.RData
7fc394403f3122a3ee70201059851ee2 *data/hsa04370.RData
cd14a05ec738c2503c570942a3c45e9f *data/hsa04371.RData
364d70813f06dd4ca00b5b1e8e02a388 *data/hsa04390.RData
6e1b1db57070e33d7d3698ccac9ce61a *data/hsa04392.RData
4141cc130f89ac9955265866b9a5d297 *data/hsa04550.RData
936b9da721a99f7ff712371dd8c0682a *data/hsa04620.RData
69269bfec0a749639b5b6fca9da65b19 *data/hsa04621.RData
bb7dbc104948f8a7265ede38c0b934e5 *data/hsa04622.RData
3249af93802361a46644183e7e7bae27 *data/hsa04625.RData
a3fa455cddac84dbb509238d0c34b054 *data/hsa04630.RData
bb3143c6d9ef8c9010d04b404c15f55f *data/hsa04657.RData
11de662f54412c16a2ad687ec80bfa40 *data/hsa04660.RData
62b9cb3835faaf5ac522ea9fc1f19cf3 *data/hsa04662.RData
ce7660e411742d6594fb6cdd37a0f299 *data/hsa04664.RData
3a7114f5f2e5ed973d810d9b2fecb250 *data/hsa04668.RData
8835bda9c8a570b9730a7cb3248d4b84 *data/hsa04722.RData
6ad3287b972b3b1b1cb4afe91e0472b1 *data/hsa04723.RData
b5593b3bdf3d28e7ac4ad1b177d6d1a0 *data/hsa04910.RData
3d636aedc536b0a587704e605b71ad82 *data/hsa04912.RData
ab1f0980b0475a77234e982a5a3ba0c2 *data/hsa04915.RData
e0f6e2ca8a1e1895d50569276669e00d *data/hsa04917.RData
27df5a30153b9af9f7887dd8bc475043 *data/hsa04919.RData
01c531760fb5f4cb64d29cce12e5ba27 *data/hsa04920.RData
1cfb37f1c2873ed9d8d8b267c7ef3883 *data/hsa04921.RData
412ae24e437c99dba34d8775d3f7ba2f *data/hsa04922.RData
c9e81805b1e4ef85d9ba22c2813817b2 *data/hsa04926.RData
b67bea360c91542674074cbbc17a0f68 *data/hsa04933.RData
df51f78097a553804a709ac49ecb612b *data/hsa05120.RData
df279368495e118f0b1957eaa334520e *data/kegg.collection.RData
8517fd4b196cb8ba5f45f26de70efd5d *data/opossom.genesets.RData
7d88ff9c0b27814fc6f38afdab5f00f0 *data/opossom.tissues.RData
800bda69eb48c58d94c7fdecce6fa84a *inst/CITATION
5a778e8798c60e16a8f7184900e53b1c *inst/doc/Vignette.R
ff399ae2995d4929c521fd714fa10580 *inst/doc/Vignette.Rnw
49ef9ab591144d81e5f05e6d991c5bde *inst/doc/Vignette.pdf
b2bfedda3da7c6922731e864a78de3a1 *man/oposSOM-package.Rd
fd9e6abe43975f9dcfdb61e69f101d0c *man/opossom.genesets.Rd
d4bc599de36299cb2d0ca08781192c19 *man/opossom.new.Rd
444f1515f2014257064297a2fe9b22fd *man/opossom.run.Rd
700f384d7e070d8d386497a164f2c4f3 *man/opossom.tissues.Rd
88cf1997d1f3cd7ff97aed6a7a891399 *src/DeltaMatrix.cpp
2149cef176860dd044a9027af99031d4 *src/DistanceCalculator.cpp
8465ee3c046dc4b929d81033152f5339 *src/Makevars
1344f2b0991ab305a1a99893493c907d *src/Makevars.win
e00e25406759971e672aebea3ee44516 *src/NeighborhoodMatrix.cpp
8a452fd1071789521e90ae1a9ce3acec *src/RcppExports.cpp
154cd8d9d5faef8c570501456dd006c4 *vignettes/HTML.pdf
b11ba72615cdbb7e608edc3f6e63f91b *vignettes/SizeRecommendation.pdf
26394181379cbf95173553cf884216a8 *vignettes/Summary.pdf
ff399ae2995d4929c521fd714fa10580 *vignettes/Vignette.Rnw
0f8a5524853c8d4ba6ecc4784baac600 *vignettes/opossom.bib
