7d37fcdc34759b168800da482c256106 *CHANGES
a401c7a16d225454bcbd9f74680fc0fa *DESCRIPTION
c0afcf7860b6a35c33d56be1a0147613 *NAMESPACE
5378a33e854a62f60339085ed56d8cb4 *R/AllGenerics.R
97b76b78071e324c6caf15e8ee1fdcf7 *R/functions-crlmm.R
b2f166b0bf26e39fa19560d9c023ec01 *R/functions-snprma.R
286a51c928b4f986c3805af77a7a105f *R/justCRLMM.R
f3c74edd640157f9ecbcf26f8343999a *R/justSNPRMA.R
f52e94b441133f798f50930da99d364f *R/methods-DBPDInfo.R
ebd0eab835c107f0a8cbdd26bec50086 *R/methods-ExonFeatureSet.R
e12dd59e7b3d21b97ebc1dbd585fb54f *R/methods-ExpressionFeatureSet.R
3ee2bbfb8f56ea68b2e7b78ba1d7fc0c *R/methods-ExpressionSet.R
1bb809db5e4efa7c5bb9a62ff50ada6c *R/methods-FeatureSet.R
a1fbb7ea289b5aa33c4f1dd3092898f8 *R/methods-GeneFeatureSet.R
8612ecdfedd3b5713e5938d93e02704d *R/methods-GenericArrays.R
e311908d48553e961ca486b680d39364 *R/methods-HtaFeatureSet.R
de79194f2d99fea774c4ba8b379ba66c *R/methods-LDS.R
3430c0f6644b5750b97eb2f252e906c4 *R/methods-PLMset.R
a07505f2fe959302a0cd1379d9484fa2 *R/methods-SnpCnvFeatureSet.R
933ddbca5c52ec0c020bb2a387104eb9 *R/methods-SnpFeatureSet.R
26889b2348a8e40ed9ef46a5adda2bda *R/methods-TilingFeatureSet.R
c4987ab89abac4a2a7cfbc76116a511f *R/methods-background.R
0a8eb007fa6df7921a63fa35f6f98520 *R/methods-genotype.R
2971ed81b57f10c25e1226435a519d2a *R/methods-normalization.R
8fbe3815782fc33b41028133cb816aa9 *R/methods-snp6.R
ddf2c804cbda19773a3a606f21fabcea *R/methods-summarization.R
771cda2c85276dc026876295a0a24930 *R/read.celfiles.R
107434f7e07f2dcd8e1ab87252ad50ab *R/read.xysfiles.R
db9e02dbc922a42429b77a917964927d *R/todo-snp.R
e9294e6f5cc495df2d9cde88be5d829d *R/utils-general.R
a6e6d1b2b484e44f9b6e0f7ee64d5322 *R/utils-selectors.R
c474b7805593ee33a27635bdd7269732 *R/zzz.R
aecea929ad2288c95ec947b88e94eaaf *README.md
83cdc5966fafbec1dedbb39980f6b04d *TODO.org
abeb9de2b49712d03717420da49d6a07 *aclocal.m4
6acba64b001d8f99eba20b84e7500650 *build/vignette.rds
db5854ed34d12ea29af1f41107c86751 *cleanup
1d6167a77c56a8817c02360555c3ba2e *configure
694f8cb2cea59b4012f22bdf486e2143 *configure.in
05174453f245ca630cd01c9ea6496b60 *inst/CITATION
35c4a8fafe852be5f50df45b80231556 *inst/NEWS.Rd
61d4f8c20aa3a7fb818715b8b9bde7a0 *inst/doc/oug.Rnw
b2704ccaf6346538babea8cba37310a4 *inst/doc/oug.pdf
5166ac0694b68053ee9f28478ef0afd7 *inst/scripts/FrameworkPreprocessing.bib
6118872624b293135433d80657d4b2b5 *inst/scripts/getVersions.sh
6fd1016da69a920c46ddb839f79cc87d *inst/scripts/oligoVignette.bib
facf6293c6b783dbac026aa18bb1eb12 *inst/scripts/oug.Rnw
a844a87b0f3e0c950d5d1681e1973328 *inst/scripts/oug.pdf
9362bb9bffc0fe68a09daff9eedfb4a4 *inst/scripts/primer.Rnw
b73d71f021c5eb85a3b60ce5ed2a3baf *inst/scripts/primer.pdf
234be9fc0c55bd65120bb346eae810ca *inst/unitTests/fids_ref0.rda
86eeda1a3ef38a7187ce06b7b5d9a245 *inst/unitTests/gen_rma_t0.R
c56b56cca7954f8bed99337acc3b3964 *inst/unitTests/gen_selector0.R
7ae4f77ca793613004b2f2f58c1377e9 *inst/unitTests/i0.rda
22e1cb24384add8d2bbe9b1f12c949f9 *inst/unitTests/rma_ref0.rda
da996936de3fd90a64064c0978163c56 *inst/unitTests/test_rma.R
c40d4a7291a065ea3aff4325b89974c9 *inst/unitTests/test_selector.R
2005572a24bae2c58c53b020822a06a9 *man/Index-methods.Rd
114377ee4042a052502569d76161b87c *man/IntensityMatrix-methods.Rd
58423baffc5aaef5f6d7cba6ff2733af *man/MAplot-methods.Rd
4f3083d30e266b326c015944f2635e50 *man/Sequences-methods.Rd
c629fcf26f61664358d54f6a326934a3 *man/basecontent.Rd
a383313f0b9aafcfbfff7730a162f2ba *man/basicPLM.Rd
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8200e42006d790497d549ffb7f0af7d3 *man/boxplot.Rd
46582c35ab401c74e9d76d4d33b9c7b2 *man/chromosome.Rd
19cbccce9677a58b87efbce7221cff19 *man/colors.Rd
5e9d1f2749f9baee7fa9ca17d70b21e9 *man/coordinates.Rd
a9a87bd515dfebcab7becb60886692c1 *man/crlmm.Rd
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8a99cb1bf6aef479f430838a31b719ec *man/getAffinitySplineCoefficients.Rd
6bef36577e4e063258648c217941e3f9 *man/getBaseProfile.Rd
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8692e72aaeedf9c9210d6495200455b9 *man/getNetAffx.Rd
435b65bef87ebe67a6e0150aed54c302 *man/getNgsColorsInfo.Rd
4ee2ba42f12333121d418053222cb2e8 *man/getPlatformDesign.Rd
fb811eb490219e2aa3a1476b6cfb0375 *man/getProbeInfo.Rd
04490434e35d13f117dc3a9eb596c9c7 *man/hist.Rd
d8db35376041a37cf02a240f111d9629 *man/image.Rd
377686f37c735adec8680b0a4f9ad6a7 *man/justSNPRMA.Rd
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3c64b53dd8dd779ee0d80ef69fc75b5e *man/oligo-package.Rd
2003dc32825479f9a6143fd551875576 *man/oligoDefunct.Rd
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0698f43212b022c5e1c4e53b9082e544 *man/pmAllele.Rd
381353c0919f63165d3315d18daee4a6 *man/pmFragmentLength.Rd
8bc36153729c6b1db627c44efbab19ad *man/pmPosition.Rd
9d7a179213bfb79b416657276e3f27b9 *man/pmStrand.Rd
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026f4f0543535a65b4a01265b7af51a4 *man/probeNames.Rd
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6c990fb1324222cbfd150f284f08ace8 *man/read.xysfiles.Rd
6b5b9a1e43f3d96ca1f396e2ad05fcf7 *man/readSummaries.Rd
6647b280e0f8342cd9cdf65c9bf15756 *man/rma-methods.Rd
284082c2011992bb3a36f794be5e8d87 *man/runDate.Rd
71e711f147f91a4c07fe0a1ee212d1da *man/sequenceDesignMatrix.Rd
2c7fde14697293879228312c46552775 *man/snprma.Rd
eef2000910dbb859b6a06919921e189f *src/DABG.c
d9358be4b7f002294ef05476ce5f551f *src/Makevars.in
86ebcea9490785f7789f3cde94c0feb8 *src/Makevars.win
e1c30e1d09b8f294f6d73ac7749032b8 *src/ParserGzXYS.c
953fe19404d5d07e9a6613c05962b94c *src/ParserXYS.c
ddf990aaf10a54864bd4519f310eec44 *src/baseProfile.c
90b855a1fee9a222a8c70b8c210afe55 *src/basecontent.c
22ecad2bd68f5291d3a716c40e647718 *src/chipbackground.c
714d76885de45d17443966bae1c0cff7 *src/mas5calls.c
0b1d3ab6601e548056c2403208ecbf66 *src/rma2.c
60e9223ca5b479489d8bccc0f6f4eb18 *src/rma_common.c
0bbde5c2d451997a5eb824286d1081e5 *src/rma_common.h
e245b25fd852da190781e343b1bec362 *src/trimmed.c
c4f20e2c580d5b8f889f02f6c374fbd8 *tests/doRUnit.R
61d4f8c20aa3a7fb818715b8b9bde7a0 *vignettes/oug.Rnw
