Package: methylSig
Title: MethylSig: Differential Methylation Testing for WGBS and RRBS
        Data
Version: 1.22.0
Date: 2025-07-28
Authors@R: 
    c(person(given = "Yongseok",
             family = "Park",
             role = "aut",
             email = "yongpark@pitt.edu"),
      person(given = "Raymond G.",
             family = "Cavalcante",
             role = c("aut", "cre"),
             email = "rcavalca@umich.edu"))
Description: MethylSig is a package for testing for
    differentially methylated cytosines (DMCs) or regions (DMRs) in
    whole-genome bisulfite sequencing (WGBS) or reduced representation
    bisulfite sequencing (RRBS) experiments.  MethylSig uses a beta
    binomial model to test for significant differences between groups of
    samples. Several options exist for either site-specific or sliding
    window tests, and variance estimation.
Depends: R (>= 3.6)
Imports: bsseq, DelayedArray, DelayedMatrixStats, DSS, IRanges,
        Seqinfo, GenomicRanges, methods, parallel, stats, S4Vectors
Suggests: BiocStyle, bsseqData, knitr, rmarkdown, testthat (>= 2.1.0),
        covr
License: GPL-3
BugReports: https://github.com/sartorlab/methylSig/issues
biocViews: DNAMethylation, DifferentialMethylation, Epigenetics,
        Regression, MethylSeq
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 7.1.0
git_url: https://git.bioconductor.org/packages/methylSig
git_branch: RELEASE_3_22
git_last_commit: e0dc461
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 05:02:53 UTC; biocbuild
Author: Yongseok Park [aut],
  Raymond G. Cavalcante [aut, cre]
Maintainer: Raymond G. Cavalcante <rcavalca@umich.edu>
