Package: methylPipe
Type: Package
Title: Base resolution DNA methylation data analysis
Version: 1.46.0
Date: 2025-07-22
Authors@R: c(person("Mattia", "Pelizzola", role = "aut"), person("Kamal", "Kishore", role = "aut"), person("Mattia", "Furlan", email = "mattia.furlan@iit.it", role = c("ctb","cre")))
Description: Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.
License: GPL(>=2)
LazyLoad: yes
Imports: marray, gplots, IRanges, BiocGenerics, Gviz,
        GenomicAlignments, Biostrings, parallel, data.table, Seqinfo,
        S4Vectors
Depends: R (>= 3.5.0), methods, grDevices, graphics, stats, utils,
        GenomicRanges, SummarizedExperiment (>= 0.2.0), Rsamtools
Suggests: BSgenome.Hsapiens.UCSC.hg18,
        TxDb.Hsapiens.UCSC.hg18.knownGene, knitr, MethylSeekR
VignetteBuilder: knitr
biocViews: MethylSeq, DNAMethylation, Coverage, Sequencing
git_url: https://git.bioconductor.org/packages/methylPipe
git_branch: RELEASE_3_23
git_last_commit: 2bc3fc9
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: yes
Packaged: 2026-04-28 23:14:44 UTC; biocbuild
Author: Mattia Pelizzola [aut],
  Kamal Kishore [aut],
  Mattia Furlan [ctb, cre]
Maintainer: Mattia Furlan <mattia.furlan@iit.it>
