be954974dddd7a2655442fe9c5af1cc5 *DESCRIPTION
c04fcbafa8adc8bc487708391274273f *INSTALL
d9298736355b8b67fbdf97a51861b441 *NAMESPACE
4720ff22c3860a6008becb69357e72b1 *NEWS.md
893591c5e26d0497b803f2c12085988a *R/bam_to_bigwig.R
1bd0a479ee676cc31d4e7b2d1bab6bf2 *R/bam_to_junctions.R
cd0526c045b00394f3c296bffb99a0ec *R/get_coverage.R
78ecf4f13dc76bda93ef64a633e72740 *R/globals.R
7a6f191a6e1399e1c147eba9faf7ce4b *R/install.R
8a719d2555da3fae22dd7eaa11ef1cce *R/megadepth.R
e9e4ffd63294f5a8ad88c432ed468b0d *R/prefix_utils.R
3be6a0d3264f30b4b5882a094a768f17 *R/read_coverage.R
273bec790289c12000dcc9a412fb7ada *R/read_junction.R
9f8c8dc264111a5124c836e4f61ebc23 *R/utils.R
d89bdf6e931c6cc4cc4f62aae182adf4 *README.Rmd
1e06957debfbe86948d9f8788957f09d *README.md
5e1a5961053615b02e7e0c4923a6b7ed *build/vignette.rds
14411ded8d61573d0d51cd3cdc579f94 *inst/CITATION
7700d137b7cbccf5284065347810d7db *inst/doc/megadepth.R
307a7f6c4fce8dc37bcb52432a3f44a2 *inst/doc/megadepth.Rmd
64e03f53ed83935906e42307d6c8b78a *inst/doc/megadepth.html
2b067614d9fececa6c05e53ac8a4b54a *inst/tests/long_reads.bam
96a2d30d7cbb6f1b77febb02388b5228 *inst/tests/test.bam
2464c1808143637a273c0b8dbc0aab0f *inst/tests/test.bam.all.bw
da9f9b4d5960544cba1c37e729dc872f *inst/tests/test.bam.bai
eb0fd19aad92abed727e74875ffb699a *inst/tests/test2.bam
ce8fd60d1f476613de37ff29c1dcca4d *inst/tests/test3.bam
563da81f634c424d4479b10673b065ae *inst/tests/test_exons.bed
2464c1808143637a273c0b8dbc0aab0f *inst/tests/test_output_files/test.bam.all.bw
11b90a7de8c1ce31002029f1c952cefe *inst/tests/test_output_files/test.bam.alts.tsv
dcb8a42636a2e2f37182e39029db0409 *inst/tests/test_output_files/test.bam.annotation.tsv
58c94002c3a6dc8c641b877a5e1c3ffa *inst/tests/test_output_files/test.bam.ends.tsv
dc5fc63b9783d6298945319dd625cc5e *inst/tests/test_output_files/test.bam.frags.tsv
10bad76a5be373fabdaca9d1584e7988 *inst/tests/test_output_files/test.bam.softclip.tsv
f5f736b3b9ba5f45a84d0502328e5df7 *inst/tests/test_output_files/test.bam.starts.tsv
0176bb1d0f29a9dd8978076885202782 *inst/tests/test_output_files/test.bam.unique.bw
4185ac72cbe1108ea8bc22198eceef9a *inst/tests/test_output_files/test.bam.unique.tsv
ea335ca9abc255df6187be2e485e9ca3 *inst/tests/testbw2.bed
e6ed0d2503421c5033ef842e6a7af008 *man/bam_to_bigwig.Rd
6f4ad80e0480882d24edc1e7c3d68c8f *man/bam_to_junctions.Rd
ec55ffb6eef56dcf1be5f533bb2fddff *man/get_coverage.Rd
1f647cdbcb4f57b1813919204486649d *man/install_megadepth.Rd
92bf71586b92df1ae84050b28894f7d2 *man/megadepth_cmd.Rd
cf370a45961f323770bd5c44be16b960 *man/process_junction_table.Rd
9269100f79441adf47bcd039ef6f9ddb *man/read_coverage.Rd
0d8a08ffbe5705152088cea38ec86ab6 *man/read_junction_table.Rd
c7d6c2a55588d808050d1179deb15cbd *pkgdown/extra.css
68f22bda03af4f1f9be3515ac4ebf828 *tests/testthat.R
27919e91a2c6bb251096e4af4378268e *tests/testthat/test-bam_to_bigwig.R
0d9e0635b6dd9ea0c0b9142150199046 *tests/testthat/test-bam_to_junctions.R
5ea818d8478b4dfb1d580adb1b6c45af *tests/testthat/test-get_coverage.R
e2f23386ae99c2ca96fb3f45512f2b42 *tests/testthat/test-install_megadepth.R
806e9ade3319e82ad0213753cc6a265a *tests/testthat/test-megadepth_main_tests.R
2248e8ba418cd56a7698a14087bd09dc *tests/testthat/test-process_junction_table.R
0296833f0448038a018696972fae7e9e *tests/testthat/test-read_junction.R
307a7f6c4fce8dc37bcb52432a3f44a2 *vignettes/megadepth.Rmd
