deffa562ddd11ebb38473fc617073a3f *DESCRIPTION
3bdc609c91411208c7ba9121a6e90f9b *LICENSE
d8fd8b8b7889d9db60b9afd35fedc3a9 *NAMESPACE
b2e44526507f5259cf6eec645ecbee16 *NEWS.md
29b0589a897007569d3d5d9662b2d784 *R/CallDMRs.paramEsti.R
83311101cb70cb60c24ddb2f114b2c6d *R/CovR.parallel.R
8e0c51ec15e7e844ecf5594290978b5a *R/DiffPeak_exomePeak2.R
2e54c633282c7f468775c7b9fad62b8d *R/GSE46705_TRESS_res.R
d38404c2bcc7e1811ce9923078040328 *R/GetStrata.R
ad57d00d73164af09f76721f4b6c1bf4 *R/Getcutoffs.R
31c395c8f8c018f8dde4584d632a3325 *R/JProfileMLE.phitheta.R
cf422ffcee2ef2af71f5c2cbe21db516 *R/KL_cal.R
24e2297d38bc166e3927a3533689edb8 *R/KL_single.R
61876f3bd8b9e3843d6f24f2eccd3368 *R/MLE.parallel.R
a42bf781e1f4c46557ae2167d377af71 *R/NewtonRaphson.R
808af39c3f46ebe27eca4a0edfb0bf92 *R/PlotALL_Strata.R
5ff36b8e9e0af8318decd4645dc19a1c *R/PlotAll.R
2b83569b523bbf2a536c490ad11cefe3 *R/PlotRes.R
c730e668c0644b2c7dd273b9205740c5 *R/PlotStrata.R
0d6fb8ef1a18ca175dc458218e330f98 *R/PostPhi.NBlogN.R
223f4fa9ad20b02ea11a8e75b09d3375 *R/Posterior.phi.R
17c643dce12aff3e846921ce213404ed *R/Power.cals.R
dfb3ce0020045676a451e85133184e1b *R/PowerEval.R
bc4f8de662d36cfd708538116e54ff0f *R/QuickPower.R
c118f48ecb43c3bc89236d0dd86fa638 *R/ResSD.R
30249e64ad8986d1eaaf723873577791 *R/SimDat.R
f6fcaa71122d9062486e2c319f027a11 *R/SimDat_apply.R
9c6cd405610249e5680d8aac94dc367a *R/SimPval.R
9954a986d7f31c96054bcc98f78ec0ea *R/Simpara.R
4fd1e16215e33d1390fee5b20f065cd1 *R/WaldTest.R
653d1b5a21c8e7f16777ad8fede9c7ea *R/WriteToxlsx.R
8393487dc4e7e8f6e216688207a5ff3d *R/WriteToxlsx_strata.R
bbfe4badc5c9fb242bc13a16b37e6b9d *R/adjustHessian.R
7bb31a9975626913c26f67a975a7688c *R/esti.nullsd.lphi.R
510c0dd18d93dc3250915bef0ac55f78 *R/iCovR.R
720fedec21abfd3ad62453c86a51a535 *R/iMLE.R
e858b7d34e2b7f3e7228cbf793284ee1 *R/meRatio.R
b71b19916810c0679504c1f685504a3b *R/mylogit.R
9bb80e41537a68a1958ced19ee40a586 *R/profileMLE.coef.R
c68d3d0003ab35c8d432df1f4d1c9387 *R/profileMLE.phi.R
89f5dab9a52fa13b61fdd890dfbba957 *R/profileMLE.theta.R
015439670eac3239a622140b0d14dbb9 *R/read_BAM.R
2fa79d5f05454ceb725af866e64c99d2 *R/updateBB.R
a809d3c008239624a01d6d65502ab28b *README.md
251ac6e731175ad88ae8e60e1c961c52 *build/vignette.rds
90cd5caf6368d8aa3476ca54d7af9bee *data/GSE46705_TRESS_res.rdata
9c05ab3a225c20386d9a1564d207e53c *data/GSE46705_exomePeak2_res.rdata
a708410e62b783bb8b4f26261ae8705b *data/GSE55575_TRESS_res.rdata
03a1a1953a9281abb2a4f6199efb69c7 *data/GSE55575_exomePeak2_res.rdata
d64c187c32cff19c677f41455dbfffea *data/GSE94613_TRESS_res.rdata
0d3838b08edef3cdea1bd334ec5cece0 *data/GSE94613_exomePeak2_res.rdata
4a4290aa2b44954b131c47a23f730f30 *inst/doc/magpie.R
46eeeda93324a00843656380b47b74f5 *inst/doc/magpie.Rmd
62b2b1f69ec80c1b615f0662676cf533 *inst/doc/magpie.html
48e01b59d44e224a717d2dd267d518a2 *inst/extdata/mm9_chr19.sqlite
985bb74de41546ba06bbb4133f6aadf9 *inst/unitTests/test_magpie.R
7ce1c92ab9100710099c19ddd2197f03 *man/PlotAll.Rd
6905fc1995ee9fee0a1c3f17ae6d4307 *man/PlotRes.Rd
ec5db35ca7dc3c080d1b00bbd234c38c *man/PlotStrata.Rd
b99e8ce19b5eb2818fd05ab47fe8477e *man/QuickPower.Rd
ab8fb83bbeb7b28d84b91186fd626946 *man/WriteToxlsx.Rd
d90fb52533aeeb6a63424b91b66d4189 *man/WriteToxlsx_strata.Rd
c85aaa8bb658ede7d9a8c1ba4853922a *man/plotAll_Strata.Rd
beda573cfdee1783a5bdf33c2564b978 *man/power.test.Rd
fdebfd3c2794d847cdc9163d25177cea *man/powerEval.Rd
a6e34b1833416ef7f19e346d196190df *tests/runTest.R
46eeeda93324a00843656380b47b74f5 *vignettes/magpie.Rmd
1a12b4eacee7c43a48bab81fa5d92cc6 *vignettes/magpie_hex.png
