f0d9c24638775ea60028a7e530064d65 *DESCRIPTION
e0f7eef46241045cd24abbe2d173ba48 *LICENSE
004c0ef24a95a41f70ea184d57669b57 *NAMESPACE
7514b8e2c07fcfbf99df0061bc1108cd *NEWS
87bf891cc305e9202f6753b1af5192c7 *R/auxiliary.R
6911e35f2ad9a2893019fbc8b272fc07 *R/data.R
095be41fc0e9906dcbd015e850f4be02 *R/hic.R
ecf0cc233139a41d33ca8de3e47e9dae *R/main.R
0645647bac9c0f6b229151c077247779 *R/visualization.R
0c2bc9760678380939025ce4efd172b6 *R/zzz.R
63bb6c65c05cecf88535b7f1ebf7d394 *README.md
ddc07ae29ad0d2ebb209fd8c788a85d9 *build/vignette.rds
aff2a74f01010ccee013156666f75558 *data/chiapet.rda
fbb6f14f0e3934aeb37b1450befa0858 *data/chipseq.rda
61964b95c059c5b41cab1a0cf606f686 *data/hic.rda
07b1adbafe2194c84b2c10d4bf59631e *inst/CITATION
f7b37d2da4f7faf7b9f7ae6a2172940a *inst/doc/idr1d.R
09d8388861cb9a0eb272c43f17d0358b *inst/doc/idr1d.Rmd
69babb34007313534daa503e746b9201 *inst/doc/idr1d.html
f8549c52755f4c4f95f26816f9281c9b *inst/doc/idr2d.R
1d117c8f072fdfa94321f58747c32c98 *inst/doc/idr2d.Rmd
f90332cbf097fdb627204e22e0739d00 *inst/doc/idr2d.html
4ea0618a3eb7cf2d18d1bf3b12558ba1 *man/calculate_midpoint_distance1d.Rd
123552284387558929f589ac5ed596db *man/calculate_midpoint_distance2d.Rd
1bf097a62ce877fc746079abbaa95dca *man/calculate_relative_overlap1d.Rd
93f1ed6669e0466881fe273ae9b85c5b *man/calculate_relative_overlap2d.Rd
e3ceb6500882615d1bbe78bd4822175b *man/chiapet.Rd
d5a2d6f2e5c5f5ca61d1208645ec8928 *man/chipseq.Rd
585ecbe6fb92841a4f0c5ccbaca4a3de *man/determine_anchor_overlap.Rd
68f6af767a542fe3e3222c8f369e9bb8 *man/draw_hic_contact_map.Rd
ebe29ba1bc155d1e1d7beb430399ed2a *man/draw_idr_distribution_histogram.Rd
a004d8d45bfd09b55a029b2143c45578 *man/draw_rank_idr_scatterplot.Rd
a4dd693c123feac1900c73dccb5351ea *man/draw_value_idr_scatterplot.Rd
19a1fcd6e836758d7a641931b39a7462 *man/establish_bijection.Rd
b37b58a7d11ae7fe9952ad1674b182d6 *man/establish_bijection1d.Rd
f1e750362930a9fac6bad62ecd44f4db *man/establish_bijection2d.Rd
746eb86447c3e4e743f6387cca3cdf44 *man/establish_overlap1d.Rd
8642b999715bff6a0580cd0c0c5b43e6 *man/establish_overlap2d.Rd
59f506d604cd3c78c91e044d2c197eed *man/estimate_idr.Rd
91da3b46ddf4cc4cb132cccf4bd6a3fa *man/estimate_idr1d.Rd
24ffbb4439e38ce2db7d4c2b475308a8 *man/estimate_idr2d.Rd
49b49084be0935a3f7c8aca2fe98000e *man/estimate_idr2d_hic.Rd
434ad2a5f28aa8dabcd6a754cb3cabb7 *man/hic.Rd
04be51b966590769c3428f99faf95b77 *man/parse_hic_pro_matrix.Rd
8ac9bbd378bc9fa17fb7ba4bae008cfe *man/parse_juicer_matrix.Rd
c2351bfc8ea1d11562b6e0bcfa17a71c *man/preprocess.Rd
c2b005d3fbddfe0dd5bf5ab63ae589e8 *man/remove_nonstandard_chromosomes1d.Rd
66207c4aeb76560ca0e5a99455aaaa7e *man/remove_nonstandard_chromosomes2d.Rd
29e1f8077f2fc5ce2ecd3fe201875eed *tests/testthat.R
6c5dd71bab9b151cb6d34b2ebecfb13c *tests/testthat/test-anchor-overlap.R
a1043d9c4d3d8c3022b47313355ea4f0 *tests/testthat/test-distances.R
aea62e29392fe826a6c970e5ee5591c0 *tests/testthat/test-hic.R
285245a2e83d86b18829e633d85ff60f *tests/testthat/test-main.R
bda9843b9108d2e587dc209f9988890d *tests/testthat/test-visualization.R
7016640d7d64870fe56a0859f060da7b *vignettes/bibliography.bib
09d8388861cb9a0eb272c43f17d0358b *vignettes/idr1d.Rmd
1d117c8f072fdfa94321f58747c32c98 *vignettes/idr2d.Rmd
