@article{castellano2020fobi,
  title={FOBI: An ontology to represent food intake data and associate it with metabolomic data},
  author={Castellano-Escuder, Pol and Gonz{\'a}lez-Dom{\'\i}nguez, Ra{\'u}l and Wishart, David S and Andr{\'e}s-Lacueva, Cristina and S{\'a}nchez-Pla, Alex},
  journal={Database},
  volume={2020},
  year={2020},
  publisher={Oxford Academic}
}

@article{sud2016metabolomics,
  title={Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools},
  author={Sud, Manish and Fahy, Eoin and Cotter, Dawn and Azam, Kenan and Vadivelu, Ilango and Burant, Charles and Edison, Arthur and Fiehn, Oliver and Higashi, Richard and Nair, K Sreekumaran and others},
  journal={Nucleic acids research},
  volume={44},
  number={D1},
  pages={D463--D470},
  year={2016},
  publisher={Oxford University Press}
}

@Manual{POMA,
    title = {POMA: User-friendly Workflow for Pre-processing and Statistical
Analysis of Mass Spectrometry Data},
    author = {Pol Castellano-Escuder and Cristina Andrés-Lacueva and Alex Sánchez-Pla},
    year = {2021},
    note = {R package version 1.1.13},
    url = {https://github.com/pcastellanoescuder/POMA},
}
  
@Article{limma,
    author = {Matthew E Ritchie and Belinda Phipson and Di Wu and Yifang Hu and Charity W Law and Wei Shi and Gordon K Smyth},
    title = {{limma} powers differential expression analyses for {RNA}-sequencing and microarray studies},
    journal = {Nucleic Acids Research},
    year = {2015},
    volume = {43},
    number = {7},
    pages = {e47},
    doi = {10.1093/nar/gkv007},
}

@article{creixell2015pathway,
  title={Pathway and network analysis of cancer genomes},
  author={Creixell, Pau and Reimand, J{\"u}ri and Haider, Syed and Wu, Guanming and Shibata, Tatsuhiro and Vazquez, Miguel and Mustonen, Ville and Gonzalez-Perez, Abel and Pearson, John and Sander, Chris and others},
  journal={Nature methods},
  volume={12},
  number={7},
  pages={615},
  year={2015},
  publisher={Nature Publishing Group}
}

@article{xia2010msea,
  title={MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data},
  author={Xia, Jianguo and Wishart, David S},
  journal={Nucleic acids research},
  volume={38},
  number={suppl\_2},
  pages={W71--W77},
  year={2010},
  publisher={Oxford University Press}
}

@article{subramanian2005gene,
  title={Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles},
  author={Subramanian, Aravind and Tamayo, Pablo and Mootha, Vamsi K and Mukherjee, Sayan and Ebert, Benjamin L and Gillette, Michael A and Paulovich, Amanda and Pomeroy, Scott L and Golub, Todd R and Lander, Eric S and others},
  journal={Proceedings of the National Academy of Sciences},
  volume={102},
  number={43},
  pages={15545--15550},
  year={2005},
  publisher={National Acad Sciences}
}

@article{dooley2018foodon,
  title={FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration},
  author={Dooley, Damion M and Griffiths, Emma J and Gosal, Gurinder S and Buttigieg, Pier L and Hoehndorf, Robert and Lange, Matthew C and Schriml, Lynn M and Brinkman, Fiona SL and Hsiao, William WL},
  journal={npj Science of Food},
  volume={2},
  number={1},
  pages={1--10},
  year={2018},
  publisher={Nature Publishing Group}
}

