cbcb97061d041ed4ae357ca985b6f8ab *DESCRIPTION
bf8cea6ec0066aadff9b5805162df629 *NAMESPACE
b321b7025dcb3f490307d271b3e778fc *R/0classes.R
51e15e2983c0700fe43d1433633ec44e *R/addXCMSPeaks.R
33823d60e86c2747802deaa7be2fb424 *R/betweenAlignment.R
14ab6f95393bc4aae00ec7aaf0ff1529 *R/clusterAlignment.R
c4b1df24c8f6401a4353084e39ca2b63 *R/dp.R
9a23bb8b4b4bbd6c68f099e37e36eb86 *R/exportSpectra.R
ba48d37ead36c81cb8bc4ff8395eefc7 *R/gatherInfo.R
192627b2d67b5f1ba34490ad61e1ea50 *R/importSpectra.R
5909494da23b1bdb4377b644f048343a *R/init.R
c0060deb2967d6d23b2526f956a5ec68 *R/metrics.R
3cc7d83578c306e96b12cd1599d69295 *R/multipleAlignment.R
5a452a8fd2eb8616b0cdc057a62f8380 *R/parse.R
95403e75106025c7ca7fa980947c183d *R/peaksAlignment.R
1f01b0ababb1eeb0abd78e5f82d76a5b *R/peaksDataset.R
e6891354d410438b9dbed1e789722b98 *R/plotFragments.R
ab3ff4ffc176ec40af0a05b63cf18b12 *R/progressiveAlignment.R
9e68838b03496fdbed00f48cdd4c863c *R/retFatMatrix.R
dc22f9eecf894c45f0ce441eef954d0a *R/rmaFitUnit.R
8d9d87dd6100ed678a012232078a211b *README.md
9319c4963712fc1ca0d5f26519bcca81 *build/vignette.rds
304b1519fa6a0841fcd39721b75e5914 *inst/NEWS
76b4af41f6afbdc3a757a50648306f44 *inst/doc/flagme-knitr.R
d273dcbd5427d929de86daf27eb947ca *inst/doc/flagme-knitr.Rnw
4b25cef096bb68cdcb0107d0512962a5 *inst/doc/flagme-knitr.pdf
870d3b48127ce28779729da1957e18c7 *inst/doc/flagme.R
0039047812a1a1476f03824859c08aaa *inst/doc/flagme.Rnw
2d27e56403701ba9f3c4157c7d91069b *inst/doc/flagme.pdf
a0f305d2766c37b1b58e7c8664dd654c *libs/flagme.so
f88be2af168d7ae8a38ae574ada4d539 *man/addAMDISPeaks.Rd
34dcb657d753e8fbd177217c2231fb22 *man/addChromaTOFPeaks.Rd
526cc4c87a0545eaa18ec60cf04339a7 *man/addXCMSPeaks.Rd
1fb2e4de26dc998fd3c5475dc82c1dc2 *man/betweenAlignment.Rd
c05de59ca4e9a8715469be88eaa061f5 *man/calcTimeDiffs.Rd
a1a508a5678209785bcecedf2bc442d1 *man/clusterAlignment.Rd
29b92c4ef9655f455c4ac7d0c6ce2823 *man/compress-peaksAlignment-method.Rd
7cf2b7355c513ec345579f52a6a4c302 *man/compress-progressiveAlignment-method.Rd
9ecd7e9782e2da0ddf630af5dd404008 *man/corPrt.Rd
3b130745b7efe556d801503a7a4d7151 *man/deDuper.Rd
a9a3f7b99a1fc5f35c2300a47187b30d *man/decompress-peaksAlignment-method.Rd
d1c133bbe044b5c200f83205b866201d *man/decompress-progressiveAlignment-method.Rd
83e0f0699808cb2785a33a2e185af29e *man/distToLib.Rd
7f676fba9998fffacc938beeb3043dd8 *man/dp.Rd
b05e9b6b32e126123006f8685f305076 *man/dynRT.Rd
4af35b42e74a02db8ec62b54f8cc1c67 *man/eitherMatrix-class.Rd
f39d96276b7a09d068924dee9513c043 *man/exportSpectra.Rd
ca4a983122e106ee40807816c98658f3 *man/gatherInfo.Rd
ec883a2a86dc4af506fb1c6e796b2f39 *man/headToTailPlot.Rd
a5c2fc0e4e7e9180525d58382dcc727c *man/importSpec.Rd
747b99202ffb3e19a08fe0509d293bb9 *man/imputePeaks.Rd
4b66222ace26c86b66dee5f84f45547a *man/matchSpec.Rd
e133211fc9d8d90bda54bf80ed27a635 *man/multipleAlignment-class.Rd
779a8eef224fd65053bc92e434c2ddd2 *man/ndpRT.Rd
411a22fc01196a577e5332cd57453593 *man/normDotProduct.Rd
af768351d0b2a2ae7b1add335b36b257 *man/parseChromaTOF.Rd
8dbe30b0a2bca3cafc0d92673f067dda *man/parseELU.Rd
e6ca76bd28a1e446aa21400c25927e71 *man/peaksAlignment-class.Rd
5d2da442f78d4b96ffa690b6eac1fa2c *man/peaksDataset.Rd
bdab530cddab0969a913981b58c248b3 *man/plotAlignedFrags.Rd
0efe37cae349cd8d7aaf9756b5d34636 *man/plotAlignment-peaksAlignment-method.Rd
c9aa5481252fe5d01e208843ee72c857 *man/plotChrom-peaksDataset-method.Rd
a91256e5c81719af997e9202a9efd35b *man/plotClustAlignment-clusterAlignment-method.Rd
576d7656d04d27d7c17e88bdea7cfcc5 *man/plotFrags.Rd
87b5a6739f67f0fa47c1af598d070836 *man/plotImage.Rd
dbb36f8b22b33c0e0910ffcc9bcfe540 *man/progressiveAlignment-class.Rd
2f4cac00cbb71e89fab2be7bef747c27 *man/retFatMatrix.Rd
a9c22bc0ac3f894b928a578acf0eab66 *man/rmaFitUnit.Rd
7228bb5218794ab31291993ae38be203 *man/show-multipleAlignment-method.Rd
4413a01de33216f877917896cf57d477 *src/dp.c
2e8137efb6b9d859d8c715155de8c908 *src/flagme.h
677600723ba3014049104f64cf92690d *src/init.c
bc932db2e47182f9f9dfa6ecbbae2e8e *src/pearson.c
d273dcbd5427d929de86daf27eb947ca *vignettes/flagme-knitr.Rnw
0039047812a1a1476f03824859c08aaa *vignettes/flagme.Rnw
b1f478f6eaa105a2c4809254e7881e45 *vignettes/readme.txt
