6ac94929be6ef811d654f0e9a8a7f19d *DESCRIPTION
b30b4c364a62a09b6910855dd3a32a50 *NAMESPACE
a2a99dc4e3b1bff5093c7ceeb6a0c3b2 *R/buildfCI.R
81c76c1b5471a26060aab3af5a6ab22d *R/callfCI.R
559250ee9fb970a8c6278efef72961cd *R/classfCI.R
49fe3d51c47804b9a3ad41f6c4486be4 *R/findDivergencefCI.R
d63c14f1e5df6d720df82d1da2c29c33 *R/plotfCI.R
da57fc73f6ddc6a1b3c9e301eda60358 *R/postProcessfCI.R
5c10ff939d190fdd0c1371b387e042bb *R/precomputefCI.R
615a56ae6ab43e65a2186c0f9d6dbc74 *R/utils.R
4bec89269498d24b142cdeb0b635bd8e *build/vignette.rds
81a9f006320c17cd87d957b299bcbf3b *data/fci.RData
63afd23abbecdf7f22791693615de5e7 *data/multi.dimensional.fci.RData
84088863454599436bbbaef05380375d *inst/doc/fCI.R
6c70104a532e8f5941443e867a4d0670 *inst/doc/fCI.Rmd
2ac7db729b346e2af686d0bc2852c703 *inst/doc/fCI.html
32aadab54f54bfdc270e6cf869a42171 *inst/extdata/Fig1.png
b8bf172167b1ab431f24b9707f37fee2 *inst/extdata/Fig2.png
0417a67c67d919f5b9d680996e241703 *inst/extdata/Fig3.png
22387fd73f2436a2c8126e431cac8349 *inst/extdata/Formula.png
b4ce9dbad848439ad293dc992c0c5291 *inst/extdata/Supp_Dataset_part_2.txt
91ba563005d8e3870940b3db8aad7f60 *inst/extdata/proteoGenomics.txt
9f5788d9121d3909e708e5d7da769cc4 *man/NPCI-class.Rd
d33a69ff5a5545c9a85c9f32bda2e1bf *man/call.npci-methods.Rd
4a9150613de66195f7ba5e141f06096e *man/call.npci.Rd
4215018e275e786226b7c93e62166242 *man/compute-methods.Rd
62cd8dfa71c09842e71d8de8f14822e8 *man/compute.Rd
8bfa19620a7b487e44f0760a9b6c294a *man/deg.pairwise.fold.change.Rd
7f5e9fd724d2e816a4379000f7ed71f6 *man/deg.up.down.info.Rd
b8dd71fdeefd9e7ce6e1008ed3003be6 *man/deseq.median.ratio.normalization.Rd
3c5a40235bba915194a5da3d1fc94d44 *man/divergence.multivariate.distributions.Rd
f210745b8e3bf94ff0db68a4ce64d1e1 *man/fCI-class.Rd
3899c29637c2821727a76b5e71c73cc1 *man/fCI.call.by.index.Rd
7b4026df6a78498feba5b52c8c7c4a38 *man/fci.data.Rd
734c2f60397eb825ef4d8a317341372b *man/figures-methods.Rd
aafbed0aa8fa4de008c29163f7ac6580 *man/figures.Rd
9989a6d98ce9ced46d2d789a8f369a5d *man/find.fci.targets-methods.Rd
78656ebeba401c36998a9545c2760a92 *man/find.fci.targets.Rd
793dd6636b337fb3a682fdede3120fb6 *man/find.mid.point.Rd
db4921fc0085291fa5b428153adb8810 *man/get.fold.large.step.Rd
72104123c6f94317b19939957298865b *man/get.npci.data.Rd
98ba576b4c85656ecfbceb19c7348b08 *man/get.npci.distance.matrix.Rd
2c5b97c2276312bce26afebb01d6e951 *man/get.outline.index.Rd
28b1b4226e8528f7bf504dc37c7ef60a *man/get.protein.fold.step.Rd
aa7584a86290a7c9d2c4557cad0533a2 *man/get.rank.combinations.Rd
d08b04f785e47ad9c00b22033a5e0ae7 *man/get.rna.fold.step.Rd
d44c870dd1410e8f374f82d189ef9fd9 *man/initialize-methods.Rd
547799431a580b179920d1ec8e8da94c *man/intersect.of.lists.Rd
8569642cc93b64c1141426a286f82ec2 *man/is.installed.Rd
7b1ea2543cbc5fb01dcfee6b2c6b1d50 *man/multi.dimensional.fci.data.Rd
a1df741c4161b4e51fd111beaa83f3af *man/normalization-methods.Rd
3b5ad473f02c3b668bc2d29edf83ec58 *man/normalization.Rd
66b8ba65b6f78b6c982ff22d5d32c151 *man/npci.gene.by.pvalues.Rd
b93a2c4b2b42be07c179da101466f8ee *man/npci.index.reconsidered.Rd
c386a5c35f87533d2e672311da23d995 *man/npci.index.to.be.removed.Rd
7b79dddc7cebbf625f01121da20ed7a7 *man/npci.venn.diagram.Rd
f05f6996a408fb8ffa7cdce250734b99 *man/pairwise.change.occupancy.Rd
8376ddacaf443a60e3254698d6c4bb54 *man/populate-methods.Rd
be38ae2493bf652843d6eab32cfd6bc7 *man/populate.Rd
0ee643fb81521f86af18a6225405458b *man/report.target.summary.Rd
1f0570f3091eda69b36d15017a0b6836 *man/setfCI-methods.Rd
061fcec1b209e2a85c359fb82a362e03 *man/setfCI.Rd
366e8589df2a479db7d10bba971f8ea5 *man/show.targets-methods.Rd
02910375bdaa56179057b6b1a629599f *man/show.targets.Rd
db21eeea38175e1a8ba6c685fb976d85 *man/summarize-methods.Rd
f75a7b57ccc81bc32ae7cba48c8f4342 *man/summarize.Rd
0cb68fec742ea0d7b31adc7ca5c54d81 *man/total.library.size.normalization.Rd
6dff016c1e25e8ba236cefff030031f8 *man/trim.size.normalization.Rd
cd03ceb1fa1ffb0d07cf8f6f34fa5cef *man/two.sample.log.ratio.Rd
95046505215358270ce89d82d1765abf *man/two.sample.permutation.test.Rd
0ce26fda39cead91a103cc354390bc70 *man/venndiagram-methods.Rd
2bc37ecc56772fb25772fd19f966bf3c *man/venndiagram.Rd
6c70104a532e8f5941443e867a4d0670 *vignettes/fCI.Rmd
