Package: deltaCaptureC
Title: This Package Discovers Meso-scale Chromatin Remodeling from 3C
        Data
Version: 1.24.0
Authors@R: 
    person(given = "Michael",
           family = "Shapiro",
           role = c("aut", "cre"),
           email = "michael.shapiro@crick.ac.uk",
           comment = c(ORCID = "0000-0002-2769-9320"))
Description: This package discovers meso-scale chromatin remodelling from 3C data.  3C data is local in nature.  It givens interaction counts between restriction enzyme digestion fragments and a preferred 'viewpoint' region.  By binning this data and using permutation testing, this package can test whether there are statistically significant changes in the interaction counts between the data from two cell types or two treatments.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6)
Imports: IRanges, GenomicRanges, SummarizedExperiment, ggplot2, DESeq2,
        tictoc
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3.9000
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: BiologicalQuestion, StatisticalMethod
git_url: https://git.bioconductor.org/packages/deltaCaptureC
git_branch: RELEASE_3_22
git_last_commit: 7e3bbf1
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 03:34:32 UTC; biocbuild
Author: Michael Shapiro [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2769-9320>)
Maintainer: Michael Shapiro <michael.shapiro@crick.ac.uk>
