28a2351684cfd5276abb52b223d621bc *DESCRIPTION
d67263e735542b7ffc1b93dfc01d1fcf *NAMESPACE
4dda42953ea75efeffd0d0c70e68e00f *NEWS
0a654ec5cbdb63dcba712706dd784e87 *R/allclass.R
59cb8e32f30c6bfb7544784bb99a0457 *R/buildBackgroundModel.R
b84086b6f4b8cdc276688502101823be *R/cachedEnv.R
43307fc34a69f95d23e73eaf264c630b *R/cleanPeptides.R
37a6f2a5be19b305234c6eda80f48c06 *R/dagLogo-package.R
bdc241f161a49f7e9fca52a79fb0c2fc *R/dagLogo.R
4fee489541989c4f2a512212ced14e7f *R/data.R
049fd8acd4d5143a171b66d044d0ccc1 *R/fetchSequence.R
d24db4c322babec61426024c2d4f75be *R/formatSequence.R
74dafea8866bd533c90918b6dc069ad1 *R/prepareProteome.R
de13fb43ce471df8d8cc34be0d99dd60 *R/prepareProteomeByFTP.R
fd1dc69b8e6f679f0056e9416e172002 *R/prepareProteomeByUniProtWS.R
397499f7e32bd96098177ca0f4f1baf3 *R/testDAU.R
812306271a7b147e0c4bcb4861c222de *README.md
8fd998dcd42a370ec37934e1cc65ea32 *build/vignette.rds
0fd2fd2c1b25171917b7904963924479 *data/datalist
97b58d0b997809c05f0e9612b4ba1b0f *data/ecoli.proteome.rda
2734d73b3e3616190a43450754c85b93 *data/proteome.example.rda
a0e2d25104d310df85ee326825d77641 *data/seq.example.rda
74d21781a8537e093dbe48673084f779 *inst/CITATION
4bdb398cdf5dc34c417b514ea72294ca *inst/doc/dagLogo.R
87ca201be851dc1c37984af40c31fbd0 *inst/doc/dagLogo.Rmd
012de7c1e86f71906503153b664290da *inst/doc/dagLogo.html
3d4c2e53c0e3a9f9bc6d63c9b90c06e8 *inst/extdata/HUMAN.fasta
ee0193fbedae3733edeec9c915fa32e8 *inst/extdata/cap.fasta
8ded3daf45f27b7b5035727b2d47bcdb *inst/extdata/dagLogoTestData.csv
d6edf5d78add42b9a2afb85816bce714 *inst/extdata/grB.txt
f199819963c39e5dceb6253ff4c97577 *inst/extdata/peptides2filter.csv
9b6fd47ccdc940b2dd51c9a5ef7e3210 *inst/extdata/peptides4dagLogo.csv
0c044532876ef9682fa89fd647c18ac1 *inst/extdata/sample_seq.fasta
8a2fecff3a6240b09e454efe821ad1b9 *inst/extdata/test.data.txt
c65d0026536ae82bc97d9a5c38c384f1 *man/Proteome-class.Rd
23a2f5cce1edb29a508222691a920b62 *man/addScheme.Rd
84e41793e4ad248dc8adea25dca79d72 *man/availableSchemes.Rd
ea460d1755b9cb34febc6c318fd5af66 *man/buildBackgroundModel.Rd
b4d687ef3e841cabbb4e4d1aea7ec244 *man/buildZTestBackgroundModel.Rd
0de0f787d8be4ce6616d2d12becfe0ad *man/cleanPeptides.Rd
79e59c198a99c0796132b02ec5c03d6b *man/colorsets.Rd
080c786155de767034004bc61b75a53b *man/colorsets2.Rd
78cb4caf3418199d3f9a4baf9732907e *man/dagBackground-class.Rd
3824e7973a906800f6d1d7f4b4a5f227 *man/dagHeatmap.Rd
1231594384de82370a76029961d40e8b *man/dagLogo-package.Rd
c088800b1ecf08a3c4832a1961a91625 *man/dagLogo.Rd
3bd901fcbbc4b2574a34203a2f56ea1b *man/dagPeptides-class.Rd
d63b810971298f84c0298db2d8d90ae0 *man/ecoli.proteome.Rd
8c4206bce5aa5189b3697ae03239a4d0 *man/fetchSequence.Rd
02d95ed0264b51f08e01841642173511 *man/formatSequence.Rd
130a87e8f97bf8992ea347e8e5ec5114 *man/getData.Rd
e9cd7d8a431980a2ebe55d2e6a485a92 *man/getGroupingSymbol.Rd
3e9b1d5f1b6ae3693a2b397a544fd4a4 *man/initiateBackgroundModel.Rd
61329afae205ee708474a513df4d4558 *man/nameHash.Rd
8b4601b885071666f5963e109eb2ad41 *man/prepareProteome.Rd
1f505f4fadfbe4cd3071451470e2c2df *man/prepareProteomeByFTP.Rd
aad4a85d6d2d9a9d5c69999397cfc337 *man/prepareProteomeByUniProtWS.Rd
f689ed224d010e454e234c8ba227978f *man/proteome.example.Rd
1adbba7dd81d17ad56dd7911f14a75f1 *man/seq.example.Rd
0c4a55afccb2423abed25c5ee9e7e1ef *man/testDAU.Rd
3d3b096583f699da240904490bf81794 *man/testDAUresults-class.Rd
4f34d66b4e6002556df765d4150adfc6 *tests/runTests.R
7894491a2c22bfd276ccf6f25fd1408b *tests/testthat/test_DAGtest.R
ba93d34385a2241ae17e69decfd51d0f *tests/testthat/test_buildBackgroundModel.R
fc4f0d4118c4d1790294b2cd9ac1ff44 *tests/testthat/test_fetchSequence.R
48c989aec39282e6a48af7d1a4b486a5 *vignettes/bibliography.bib
87ca201be851dc1c37984af40c31fbd0 *vignettes/dagLogo.Rmd
2bb6eec245d8d2b98d4759aba37e9a50 *vignettes/dagLogo_flowchart.png
