e796a7180e3b60ff2474c4f33df109ee *DESCRIPTION
42798d159c83cf26beebc1a1a1e7c067 *NAMESPACE
9d996a728156126b145acefad590f4b4 *R/cigar_extent.R
37dc86fccf22a634e6477b49023a84ca *R/cigar_ops_visibility.R
a30c3e6818a8b993ea1642dfac8d184b *R/cigars_as_ranges.R
c13e8ea8ca05152574f4cb73070206c5 *R/explode_cigars.R
5f8565a575b774138380f7c322d5fb8d *R/map_ref_ranges_to_query.R
7def92e7e03fd6fe7d7998e90ef9f0e2 *R/project_positions.R
7dfd5edecabbd41fbc46bfa643936708 *R/project_sequences.R
0bae8089d2bfec70b1fe6351c614fe7a *R/tabulate_cigar_ops.R
5465113b15eb3f46cafa5d7128659988 *R/trim_cigars.R
0d9cdd9fede092b49f4a20f301593b53 *R/utils.R
c89d692aab434edc94917129f0b6736d *README.md
2009a80f0814e181cb6cb7bf31907208 *TODO
3f766b0dca7b042cbd9371f766108f13 *build/vignette.rds
70d83c52f45c3df16f27574ce985bdee *inst/doc/cigarillo.R
f7c37b121e751babbf3a8eff6fef2b6b *inst/doc/cigarillo.Rmd
83b4c2488acf8238106f910632249432 *inst/doc/cigarillo.html
30b79f4336a353839740a96c7a4f1c7d *man/cigar_extent.Rd
7c7c71940d3fb0dd9c464ce0883262ed *man/cigar_ops_visibility.Rd
f719ae41368cb3fd9039323eeb0c9f69 *man/cigarillo-package.Rd
70d5c20b3fc83a777c19072f542e550c *man/cigars_as_ranges.Rd
5039779e6035b3eee506220ddc15ce68 *man/explode_cigars.Rd
6f94fad5135292552fb41135acacc69b *man/map_ref_ranges_to_query.Rd
dace79dc3a3d6723ed51b329385c2fff *man/project_positions.Rd
f5e5bc87a2e08acfc0caba0d6db8436f *man/project_sequences.Rd
8f6d5494257035a6343b9722592110da *man/tabulate_cigar_ops.Rd
0ffd023b8298915c4c1a8f5cd95c244b *man/trim_cigars.Rd
b0447144238dce005a1fa8a625d1563c *src/IRanges_stubs.c
49f1e6a7bda0e9cf6de505c1af77a002 *src/R_init_cigarillo.c
bab0b4b09cf160fa0109ae25fbb471ef *src/S4Vectors_stubs.c
696514c9a358439d477f515429d702b9 *src/cigar_extent.c
5f0d880bcfeb7a4cd196b360dc0ffe2a *src/cigar_extent.h
51ee2fa955d48ccadc3381be98b40811 *src/cigar_ops_visibility.c
55583d617e9e7b48e82d0bd257d14997 *src/cigar_ops_visibility.h
aa4c3adf9c2d6f587d02524f2f7320e0 *src/cigars_as_ranges.c
172b370b2d36ba37f0953e8ca9952629 *src/cigars_as_ranges.h
96ab831c498fe35c2fdd2cf311ac0800 *src/explode_cigars.c
8f58a9f69152db3484a876af59d63c65 *src/explode_cigars.h
fa6997fa7179c15347d7165c46587ab2 *src/map_ref_ranges_to_query.c
f989f17f571705c0d6defa8d92271d2c *src/map_ref_ranges_to_query.h
a9af6c7cfe2b203aa03c61e51511b23c *src/project_positions.c
70d974bdd2944bde8b7f92f0b19bbd37 *src/project_positions.h
dfda4287821d8fea9542a7e48fbf1348 *src/tabulate_cigar_ops.c
5ce3951bb2973b1f77489c69f1b6e850 *src/tabulate_cigar_ops.h
1d81808839b75bd157cecd6cdf3b06e8 *src/trim_cigars.c
d21fa17bac45d5a3bbe72901b4462c01 *src/trim_cigars.h
5014d11840d186e5719bfbabffe88a1c *tests/testthat.R
7691d043d600d54e133a696ebd3b37fa *tests/testthat/test-cigars_as_ranges.R
d692a996c9db14a221b1e07a7cb4e118 *tests/testthat/test-explode_cigars.R
17cd069a58961cec6340e3269b056632 *tests/testthat/test-map_ref_ranges_to_query.R
f5bd6c4fa460ad8c91f13973e94e4fb9 *tests/testthat/test-project_sequences.R
1c0691c0d9d8e6f825576e27be85d1a4 *tests/testthat/test-trim_cigars.R
f7c37b121e751babbf3a8eff6fef2b6b *vignettes/cigarillo.Rmd
