2d478885e5078469f8d23c2f2434be75 *DESCRIPTION
c80fb0939d5586f8047cf7a35a1e1f02 *NAMESPACE
a66d19066384dabc118a05f8e7eefdd2 *NEWS.md
353be7603dd76a27cfddef38ec9498a8 *R/calMetrics.R
320b93084dc7ba355f6e0883211aa9f5 *R/callCNV.R
9e9b6e2caa7eb7009aa421f5518fd55a *R/callMode.R
dce7739a0e24f5f30d7263a446538f3b *R/callMotif.R
439c17c93e5fd0e5e28654747451c609 *R/callPeakDistance.R
3c078f3583dbecfca5f33ca7367bc353 *R/callSize.R
a9f8e39a1f58136e1a1b27c17e7ad304 *R/callValleyDistance.R
cf2a60690af74d4f300bab8d362135e2 *R/examplePath.R
623903c6c7e8c4788528c82c65669c18 *R/internalFunctions.R
2ef51825f0d7134e1de8675ea06da88b *R/plotAllToOne.R
92918c92e644ccb0b2c4a65f0286f096 *R/plotCNV.R
07da299d0ae85e5992f72108617e38a5 *R/plotMetrics.R
ed0c2d704cea0772ee658ea4d1994a8f *R/plotMode.R
d8a2682698dc8a2801ce8af5c0ba11f4 *R/plotModeSummary.R
268210f3aa9765caa3656d74eec78b45 *R/plotPeakDistance.R
64071a290cb89688f43d57fd3b8058fd *R/plotSingleGroup.R
440498fbe591d728e17cbe9e94b1f444 *R/plotValleyDistance.R
e868fe4814c489b5adcf7f2536d0df60 *R/readBam.R
27df1e010ab262197c5d5cca59494857 *R/read_bam_insert_metrics.R
5359de97467c4d95b30538f0026e1e61 *R/userLevelMinorFunctions.R
63828304cbc98ed0465f5b02d24c47de *README.md
bc5d3eca063ab8a1282a232589d56c3f *build/vignette.rds
09248b6b26a9b019186e8c2bb6e9bcdd *inst/doc/cfDNAPro.R
98f2db3e9ae11584ca67a77b16653a44 *inst/doc/cfDNAPro.Rmd
a9e7f3444e616384f8aa9d4fc703c76b *inst/doc/cfDNAPro.html
490a5a8a2182a4a93f50cbaeaeaf71b6 *inst/extdata/groups_picard/cohort_1/sample0.txt
51adc4f96923ecfce99525efdd6fb9bb *inst/extdata/groups_picard/cohort_1/sample1.txt
d6861ce9d680228735b363ffe2055219 *inst/extdata/groups_picard/cohort_1/sample2.txt
3976b267f449c14d321a7847c22b2510 *inst/extdata/groups_picard/cohort_1/sample4.txt
af9efd8fc3270020e07f9e9946e818c6 *inst/extdata/groups_picard/cohort_1/sample5.txt
dcd7d7442a10c1a25031c0a702bcb35a *inst/extdata/groups_picard/cohort_2/sample6.txt
70918366dcc2665b7949f2b8e5d64555 *inst/extdata/groups_picard/cohort_2/sample7.txt
6198e781fd23b8721b94c8f134016795 *inst/extdata/groups_picard/cohort_2/sample8.txt
bc3d0cf06cfe0adf3fa2e98a9d20fb33 *inst/extdata/groups_picard/cohort_3/sample10.txt
59533e747b6530a2800ce72d2fec3754 *inst/extdata/groups_picard/cohort_3/sample11.txt
a398216a81ebe329150181a27c72e677 *inst/extdata/groups_picard/cohort_3/sample12.txt
3b102674e9cb269dddfa1cc547c114bf *inst/extdata/groups_picard/cohort_3/sample13.txt
957984d427551f7ca1f66b5c1d523aa4 *inst/extdata/groups_picard/cohort_3/sample14.txt
0d810cbbbf29b9e6e84a24c66ea3464b *inst/extdata/groups_picard/cohort_3/sample9.txt
e91fd2390ff27c30a84032b70b04a150 *inst/extdata/groups_picard/cohort_4/sample15.txt
8cea0b86ed819fa7f6d25050c167375a *inst/extdata/groups_picard/cohort_4/sample16.txt
bfc362087a06848472b014b4410179d3 *inst/extdata/groups_picard/cohort_4/sample17.txt
8fc03f91bb9c4e125610c63430a36372 *inst/extdata/groups_picard/cohort_4/sample18.txt
644c448fa982e1255d3c4e06f40d81f5 *inst/extdata/step6/example/sample19.txt
80c6969d20812c545136ca2e40ea1462 *inst/script/description_of_extdata.md
4a991bc5155656cb8252a83826087db1 *man/callMetrics.Rd
b226efd785a4d000ccb346689802329a *man/callMode.Rd
f5121686a273fbabd2de56570598dbeb *man/callPeakDistance.Rd
f5568ef26d0605c8c86cb49946998633 *man/callSize.Rd
08a75d098101d547f468605050d0d44c *man/callValleyDistance.Rd
94cd8a092663bcf3d5f847c6da77ab56 *man/examplePath.Rd
f38ed8de7e2ab4c803994e85fdcb5800 *man/plotAllToOne.Rd
5eebe60ca5ca2640803651a1d3e044c8 *man/plotMetrics.Rd
25e743f27ba503e6e1b4743e182e4460 *man/plotMode.Rd
cec9e115364d685d82e05acd0eab91a8 *man/plotModeSummary.Rd
8e29c9cf55484074205f3598987ea297 *man/plotPeakDistance.Rd
080487461cbaf21696cd59ace8d64533 *man/plotSingleGroup.Rd
86605b77d22b8e63adbf8f12aa132bef *man/plotValleyDistance.Rd
1b0fdec4aaeb25fa81498f3d98c5bd5b *man/readBam.Rd
3b4c9499e726e3e80ff19c7eed94e1bb *man/read_bam_insert_metrics.Rd
3b9312a1f4ac5f8fa2654de81118dd7d *tests/testthat.R
fde00d1703295a0f51ff4ff5a812f5e1 *tests/testthat/test_call_functions.R
f48d8d596fc4ffa06ef6412f2bf7d05f *tests/testthat/test_plot_functions.R
98f2db3e9ae11584ca67a77b16653a44 *vignettes/cfDNAPro.Rmd
175bfcf6bfd6d8a7f30e01732f985974 *vignettes/logo.png
