05a28a38582fbe75b8479c9874814ba2 *CHANGELOG
bcf4166492af6be7e01f1e599290a557 *DESCRIPTION
79c0d4ba3fa4473a1e08f7d6fbc27099 *NAMESPACE
ce620333275cebd596add7f587de53b2 *R/LESN.R
714d42fc2d98d77da7cbd9dff918cabc *R/PLMSet2exprSet.R
73046104a74f8e888fad7ea0a3916026 *R/PLMset.R
ec9f549597b51b63543eccb7bbebcb6e *R/ReadRMAExpress.R
e8a16dd53387b4461af9f6faeb34834e *R/bg.correct.gcrma.R
613f3659311dc46f18885abeb2ee8baa *R/fitPLM.R
012a1cd28b51a6782766237cff20a16b *R/init_fns.R
21b1b9b409f0dbfc8bc83caf3697d297 *R/internalfunctions.R
1f0d240cabb03ab7d570a954d54f5402 *R/normalize.exprSet.R
98e00d0816d844f5f6e6d8275aa8415b *R/normalize.scaling.R
8c49512d944458e2e51bc9ee7570e884 *R/preprocess.R
e56c9b77337e1014cb2cb991d59d0dcc *R/quantile_extensions.R
f724a7482813260ffc311b829e410b15 *R/rmaPLM.R
61286023e3481e05145eaf3799cc7e69 *R/threestep.R
9d21f26b5cce0fdc0109e8ea965a71c5 *R/threestepPLM.R
edbc238e583617a85359c1c057f7c54f *build/vignette.rds
24b59c974e2288222a8d89ad0d3399a7 *inst/CITATION
cf95827ba103fe74b52108e4c9990c50 *inst/doc/AffyExtensions.R
ebdf34c179f9d32b3a3ac705116ce8d0 *inst/doc/AffyExtensions.Rnw
e81eaadd54957772cb6e637641ab69c0 *inst/doc/AffyExtensions.pdf
b2be0b291d9e263a2271308a0cb2bc1a *inst/doc/MAplots.R
d4313ba26814933ff69f812e678f71f1 *inst/doc/MAplots.Rnw
ad82a408f634d959fef05ba3de043768 *inst/doc/MAplots.pdf
35ba35a87da34a92ae963f6d1ada3a17 *inst/doc/QualityAssess.R
27727bfd452f920945e0db3d97ab5b4e *inst/doc/QualityAssess.Rnw
5f9c0e24b97139653335ac41f1acc261 *inst/doc/QualityAssess.pdf
80bfb23fb4870ee8c4df7291446ed31f *inst/doc/ThreeStep.R
7946a00c2c831808d3a2513fef014833 *inst/doc/ThreeStep.Rnw
6729dbc68f6189eb12c35ef0e9ebaede *inst/doc/ThreeStep.pdf
67f1e1ac0dafa1360f91a92b1d8ced88 *man/MAplot.Rd
4e275c43746e8a1bd6b7eef7e674f5dc *man/PLMset-class.Rd
9cf2219d835bf59a37837b55421660f5 *man/PLMset2exprSet.Rd
0b3a9b8fda554ac5a0dd7c7c4e491751 *man/ReadRMAExpress.Rd
dcee68aa98f5e976a951ad8cd0e43305 *man/affyPLM-internal.Rd
3a51a06943d5039e26e4b44aeeebe8a3 *man/bg.correct.LESN.Rd
13d3ac931f188efc5bfccaafd7865892 *man/fitPLM.Rd
8cb2e0ae2ec2d587d223aef57d1e1047 *man/normalize.exprSet.Rd
4bf7f02560fb027a6f4a4ca2eb5317fa *man/normalize.quantiles.probeset.Rd
ae9b33fc85636c4fcfde6afc335fe5ae *man/normalize.scaling.Rd
d64822872e78959d0d8b798389a80c60 *man/preprocess.Rd
7fca711cc6f3b5479142be946cd1cc6c *man/pseudo.Rd
caca6f003c1d6e7aa20b9cdfd7dda177 *man/rmaPLM.Rd
1aae357926ccfef5d0ba83139041d6b1 *man/threestep.Rd
254cf32ba02d0d2db3dde138736949bd *man/threestepPLM.Rd
469dbe3af0add5b179377d0285b05282 *src/LESN.c
4c8c481321eefdb3acff01b8337107eb *src/LESN.h
098b2c001f3b66ec432fdd2ea1ea2e40 *src/Makevars
c1954c091c97a7c7d563cd6e66a89a5a *src/Makevars.win
9275ab9feca0391f08287e8f74338c6f *src/PLM_avg_log.c
5f318064bd4056e876262a2c02c9aa9c *src/PLM_avg_log.h
ec961b0d5f69fbf8c1ef996d3a13b3ec *src/PLM_biweight.c
5bc9fab2a04540cb19f12a4edf50709c *src/PLM_biweight.h
a5119e2d5128463432b48be8fe030c07 *src/PLM_log_avg.c
7b3cd39573b5dd094d03b8297ddb0351 *src/PLM_log_avg.h
552ced0614f83215e90c315b504292d3 *src/PLM_medianPM.c
8c9ce291b64ec8d7554e095c3339f88b *src/PLM_medianPM.h
8fd31359e429cc0fa29060f27a39f89f *src/PLM_median_logPM.c
e03b134845f7bd539eb0fa4eccf68f23 *src/PLM_median_logPM.h
b3b94c74da3505741a89680a3d69ecb8 *src/PLM_medianpolish.c
7aedef51db38190766cdafed0c705f18 *src/PLM_medianpolish.h
cce15cf7b2c48451117f176d5f856962 *src/PLM_modelmatrix.c
3bf4b029bffb48f128b6bddc1cec9cad *src/PLM_modelmatrix.h
87d41851ed06daeae3552bb500bfbdde *src/SCAB.c
e56e9878b1ba4c2303617d6392afcc6e *src/chipbackground.c
0cc4967e7c6622167fbc8530494d49ba *src/common_types.c
e8a2878fb5582ce57b19fb9ae4994f8d *src/common_types.h
f69feadfd0f0e7c571f87c42af4fd972 *src/do_PLMrlm.c
ccc7ed8f2b77d856136eb3a57ba4fbb7 *src/do_PLMrlm.h
48ed59eec247784d1aecb64d90154672 *src/do_PLMrma.c
44f629cc04dc32c4f91935bc24d61c7d *src/do_PLMrma.h
8106eae430637dc13428ac7ffbb1bc4b *src/do_PLMthreestep.c
f55f8b45d57012984ff04cb38ce1ed18 *src/do_PLMthreestep.h
e1a4fbdee8cc8cdd34446b6dcdd4c5a3 *src/dqrls.h
96330c6c0db88f00c3420697cc40a8b3 *src/idealmismatch.c
d6ae3c4e54b5533373fca8407b694a78 *src/idealmismatch.h
762e3bc75b3361d3ba3a6dd82859fd34 *src/lm_threestep.c
6d10f3bbb07b53431eaf1955daf2020d *src/lm_threestep.h
cba4a85fcd2bc3deab9cec8b8835e0c4 *src/matrix_functions.c
bd10d12c604bf6b97a0ef9173f72b9eb *src/matrix_functions.h
7b110cd11a66550685fef654e527b048 *src/nthLargestPM.c
07254c4fdb4b752404a8e15030f94036 *src/nthLargestPM.h
bce251c9a2d334ff6b82cffbf82dad49 *src/preprocess.c
2b52a8f3122c214a182572b7bb440266 *src/preprocess.h
9d1cfc9628868e6868811f6ec880de1b *src/psi_fns.c
649c1502385a18c7224dec21cb51d745 *src/psi_fns.h
fb98f90058c7bd61fbaf6fff48e71eb4 *src/qnorm_probeset.c
a7d568431d83113fac2decea390c994f *src/qnorm_probeset.h
df93c8c07f8c3b060e61067d86da1fe4 *src/read_rmaexpress.c
83cc3bc7d1b3821f5860c97f87154f69 *src/rlm_PLM.c
c5db2108d39c04da899b906a42a1d03c *src/rlm_threestep.c
8dad5634d079b14314f613a3485641ca *src/rlm_threestep.h
615481901bbc6ac3cfbb264845948735 *src/rmaPLM_pseudo.c
e30adffa48d6490fb53963ffca44a111 *src/rmaPLM_pseudo.h
0ae70ad41697f990fbe1afe6475941ed *src/rma_PLM.c
567c7a84a20e0df07a9a9fd164aaa0df *src/rma_common.c
29aa92807b22bb271676c54a99076b97 *src/rma_common.h
eaa9565c518b6e0dd15ba62f10b7f29a *src/scaling.c
70d0eade91b46908917ecfb04ae01b44 *src/scaling.h
7a533d263eb6e8195f33167993d1647b *src/threestep.c
67ec74383c2d1c6cce0af860a1444a37 *src/threestep_PLM.c
f12dea172cd8871c84927f308ee6ed6d *src/threestep_common.c
55c8ce8f3be25eb313a003b476620149 *src/threestep_common.h
dbe9cff0deea75a0a9ad4e2071c403b1 *src/threestep_summary.c
40aaff79e0df75ab1bc81034fe0e6d0a *src/threestep_summary.h
8a7d29cc1491a91fb694971a3691ae44 *src/threestep_summary_methods.c
7d66cd8fdab4318380c29abc431df2e6 *src/threestep_summary_methods.h
19e7655590a2c346ffbcee711de4f645 *src/threestep_summary_methods_param.h
da9ee4aedafbf52b7b742f894a90a73e *src/transfns.c
be94b163547e38411f9bb2d82cc35c73 *src/transfns.h
bffd8f77fe8c1b746c0f27b4f69425ce *tests/C_code_tests.R
ce3a90412edccc0db8e102de8d973037 *tests/PLM_tests.R
0cc096c8c154587e73c9448228951c6c *tests/preprocess_tests.R
79e4244c3b8568044f410af611dad95e *tests/threestepPLM_tests.R
3dbe0a986cf5e423d333bb878d079b97 *vignettes/00Index.dcf
ebdf34c179f9d32b3a3ac705116ce8d0 *vignettes/AffyExtensions.Rnw
31b91ca0377b637c68b0a178c4a50347 *vignettes/AffyExtensions.bib
d4313ba26814933ff69f812e678f71f1 *vignettes/MAplots.Rnw
27727bfd452f920945e0db3d97ab5b4e *vignettes/QualityAssess.Rnw
7946a00c2c831808d3a2513fef014833 *vignettes/ThreeStep.Rnw
a59bc6399160210fdedf23741855be22 *vignettes/negresid.png
18b1562f91f94e4f58df98e98e0e59c3 *vignettes/posresid.png
d1e74151f02069d380606da4dd3a64e1 *vignettes/resid.png
96a30725eec505e677267309016767d3 *vignettes/weights.png
