9985d37e6c8fb5e8ee179d94483dad00 *DESCRIPTION
9021250491ba1f6d62335472339a9400 *NAMESPACE
b72b55bac435a63b01b25c95c5c09cef *NEWS
70cec72cff0ee942a958cfdf35275695 *R/clustering.R
550a3882a34c84ac037956b8711d41ea *R/clustering_plots.R
c2a34b15963148bbf4c9324fdff2ba3a *R/coregulstions.R
559d214f92f35dc65c617591f9906e62 *R/data.R
c79bb88568d7d7d9100557d05880fdb3 *R/network_analysis.R
efcd02c35e673036865beef30b2d1f70 *R/network_plots.R
9eea5a7f7a82cdcff20b9a2ecbb2282f *R/random_dataset.R
fa7c8c4355236ceeb00f93667ceebc47 *README.md
a1e41a8293d2cb7d0829f5a167e74e3c *build/vignette.rds
eaf3694fdf0fa49ecd1d9e49ab84040c *data/HPRD.RData
26e1ce69729a6ed3e27b7c84b0e74517 *data/datalist
770298d08b7bf718b01cae471173d1f5 *data/gene_info.RData
ad9364710aa5d2205c1612a7831cad7e *data/string_example.RData
bd7be1851be341830617edcf89fa0901 *data/xina_example.RData
995d0770b06c256c1d49fa9b36e3632e *data/xina_result_example.RData
6fe043816bb740a188e65db027650ad4 *inst/CITATION
19f9d6658d2bdce657a83297792cb9ba *inst/doc/xina_user_code.R
77ae6a533ba5577ea9e8343b983e3137 *inst/doc/xina_user_code.Rmd
402d33c46fa0e9033c2b10bec6b26e2b *inst/doc/xina_user_code.html
ca978816355b830dc0c3338271389509 *inst/extdata/PARP14.csv
e1aef34eb652f463412a75e5c3409f28 *inst/extdata/PARP9.csv
d5935032144d457b61304788842af8d7 *inst/extdata/STAT1.csv
bb73980eefb2ecf5dd132ba6c37db4ed *man/add_legend.Rd
d7c9df6456285154d7328fc7ebbbd25e *man/alluvial_enriched.Rd
c9feb516a066e5ed4ffb0ca66bbb000b *man/alluvial_enrichment_tests.Rd
6a29bdbdafd7599d0645edc42a0d1a53 *man/calculate_centrality_scores.Rd
a595c8b69667c687ee6f5a8fdf05b5f0 *man/default_size.Rd
3e6dcc3694063568fe9e052ee95bc627 *man/draw_alluvial_plot.Rd
6a854a38478bd7d125c9d014eeed486b *man/example_clusters.Rd
14f0733ce7525b872f86365125742f67 *man/extract_data_column.Rd
3edc4156f42d92422369078a99d1ccaa *man/find_similar_clusters.Rd
4ea9004985cdcbb90606767bb5c4d67c *man/generate_count_table.Rd
7df0e30c54572636e97c005107dd454d *man/generate_superset.Rd
9ab7033b1fbf4ccf18c26bdb212e58fd *man/get_color_for_nodes.Rd
45c8d1c77ab97a8f49497085ac51a24f *man/get_colors.Rd
17b2880c4d9e62ebd53ddaa7cf5ce7e7 *man/get_comigrations_by_name.Rd
ecd75adaf73ceefa520cd14267f11983 *man/get_condition_biased_comigrations.Rd
fcaa3794f58b9c2d0ce394cb6b077161 *man/get_layout.Rd
482d0d036f918c05ca903fed277676a5 *man/get_mTOR_proteins.Rd
71877c0dcb74c21b706d2108ade83a6f *man/get_random_data.Rd
f918e015c654adc58c3daff952731b5f *man/get_stats.Rd
61e1b4773d074300b466aab067a8c3ee *man/get_theme_blank.Rd
146ef8188411979b8a49a090a5f34973 *man/get_unknown_ppi_nodes.Rd
1255b0d285d78ad3fb75de9901f0306d *man/gn.Rd
5ed9e6a6984250a4136a54c1449a166f *man/gn_desc.Rd
bbcccf4d692410e1a1235a74a2ae1436 *man/hprd_ppi.Rd
657a185658b31cc82a807a683d9ba971 *man/length2.Rd
549eaaa564c11c011f5aa576203d9b69 *man/load_previous_results.Rd
8a00119252fae0d89082ae1ae4bf38af *man/make_random_xina_data.Rd
9cbb4cf2e7cf69e19898337099d9cc19 *man/mutate_colors.Rd
49983839e95f57ab7c1a7e59fae37e77 *man/organize_clusters.Rd
07770c300d65c1f4ff2406d0164ce609 *man/plot_NA.Rd
100402d8adc3e8c31120187f348d0b20 *man/plot_clusters.Rd
3a7f42eb14c31ee80749ea9f8f7d1dd4 *man/plot_clusters_all.Rd
cede238c07e148ed7038fee656b7c53e *man/plot_condition_compositions.Rd
ebb50f583e20ba3669aa107d4ccc0924 *man/plot_enrichment_results.Rd
b4f172ed6fbd5e0fa3b080257b4c992d *man/rank_centrality.Rd
7e86ffd148d5e6dd6ea549ce75ac7d10 *man/string_example.Rd
86d385d111b26bf83a192220c452093f *man/xina_analysis.Rd
e33fd4775d1601823ceaf292267c9eb1 *man/xina_clustering.Rd
efee899ce27a472f0d986eaee6b8bf85 *man/xina_enrichment.Rd
da849a41687df7ae692b757f6d398b6b *man/xina_plot_all.Rd
147989cff68506afd68f87fa197efbba *man/xina_plot_bycluster.Rd
676ff25aad6f2a07998962b5cf02773b *man/xina_plot_single.Rd
19289c22df5f63b7b4319642b3893940 *man/xina_result_example.Rd
77ae6a533ba5577ea9e8343b983e3137 *vignettes/xina_user_code.Rmd
