680b9d822703c9f23374fd2a4a6f997b *DESCRIPTION
6165d26d52a4d15a203e364f77a479ca *NAMESPACE
fdaba98a7f6157b707dcfd00820f2908 *R/TreeSummarizedExperiment.R
f9b44675d2673e42852dd11e4487175c *R/aboutLoop.R
44a847652dd79b30b29346c08f5f8533 *R/aggTSE.R
cbda53b221133abcbdff84477b886a62 *R/allClass.R
4b10ec86b5d985d122b66fb04ab38fd8 *R/allGenerics.R
a10fb08d85f829cd29a439b65fd1060e *R/changeTree.R
02841965d9b3a66623dcf57a4b8b8b74 *R/classAccessor.R
a74631117746484e4284dcdeb9054175 *R/classValid.R
bd6b6448630b4e229e846a10f6b328bf *R/coercion.R
99c1fced38fd8e21be26309b3350cf32 *R/combine.R
0cffb057acbb1d15cc2281b3dae06703 *R/data.R
3516bc121a62f6758129b206c94ea782 *R/deprecate_Fun.R
b3473f9cc8f3e3f9be90e07b6cf8eb39 *R/internal_utils.R
873a7a95a820bb1c9955a9a4429626d0 *R/makeTSE.R
5dd68b40eed053ff310a4cc223ee6aab *R/tree_addLabel.R
e9cc20b3d5da5e2263004572e2fdafc1 *R/tree_asLeaf.R
aee73996fd8b81e1ca9e921211f1532f *R/tree_asPhylo.R
db250fef7885cffdac0c5183cbf9034c *R/tree_convertNode.R
1e703d0a8470478fd6513ac7e9cd92da *R/tree_countLeaf.R
f10750226348eb99acf704fb1c58ea5a *R/tree_countNode.R
0e5da6a3cef729409df12cb32728eb71 *R/tree_distNode.R
ae75c6349e7d6c65192c69c239fa90f1 *R/tree_findAncestor.R
80d5229a109c2a4e9b40c3097d97013e *R/tree_findChild.R
a2ecebea5cead855be20a73f237e57f3 *R/tree_findDescendant.R
18fa99a229cb1cb160496fe2a059c1d2 *R/tree_findSibling.R
cc24927489410edf773417585b3b255d *R/tree_isLeaf.R
a74cf110a59560136f1181a2e18d084a *R/tree_joinNode.R
ff80029227420296273562bfa1e84be8 *R/tree_matTree.R
c36f020e8b41616de7b6498963c37544 *R/tree_printNode.R
99d539e64a088ffcbd8d308369dc08d5 *R/tree_shareNode.R
06f68d4d211e598ef4aa89bb6cc55847 *R/tree_showNode.R
9261608757c708a0ac4b544351b4ad79 *R/tree_toTree.R
9c072552600fdb75d116d50dc7c41609 *R/tree_trackNode.R
d878d49469a06699924516b5d81195c3 *R/tree_unionLeaf.R
a641c57cfeff31f650e81825d5915ca0 *R/updateObject.R
5dda30db43e8cb5100163d351c37d324 *README.md
22bcd55e701414cf5f73b94f5b67184e *build/vignette.rds
8b66a49929e5b940b7296350fb1101f2 *data/tinyTree.RData
88248c48479d8d6ff5d2a4304bf57e1e *inst/CITATION
7ed39e70c236898a444d54efe347b892 *inst/doc/Introduction_to_treeSummarizedExperiment.R
d64c658ba6b7164bc9a687ae074cf583 *inst/doc/Introduction_to_treeSummarizedExperiment.Rmd
0c236c5988c98067885cda3c9f102c6e *inst/doc/Introduction_to_treeSummarizedExperiment.html
ef29d3bf7a355b65467c9dab3773be7c *inst/doc/The_combination_of_multiple_TSEs.R
a80c2db8dd0c08b7626c73ea859df3a2 *inst/doc/The_combination_of_multiple_TSEs.Rmd
9b271b6bee1d5c012626284507574532 *inst/doc/The_combination_of_multiple_TSEs.html
490c61fe50b0aa9c8a1ccb1d4ed92146 *man/LinkDataFrame-class.Rd
6937207171f237ed5ad180b4afb2915f *man/LinkDataFrame-constructor.Rd
45e2177c56355b8945f96beda5ddddc6 *man/TreeSummarizedExperiment-accessor.Rd
783c7f08123e0107f7ef79e185cc6701 *man/TreeSummarizedExperiment-class.Rd
fa7084ff167b3d94184169c63bf6d22b *man/TreeSummarizedExperiment-combine.Rd
f0c6762c6bb34f2e26f14c0e8814772d *man/TreeSummarizedExperiment-constructor.Rd
83fc6d55af38e62b1d6d284860560cc1 *man/TreeSummarizedExperiment-internal.Rd
903e688463a4ac4e7024410f99981ad4 *man/TreeeSummarizedExperiment-package.Rd
7394ce5cd9de3c7ee8c91f9678e659d6 *man/addLabel.Rd
472e70f66b2024334be7867f00b403d5 *man/aggTSE.Rd
abcf88ff9ff5222bdc4319cc0fa792b2 *man/aggValue.Rd
e1e93e38ff19cdf5380ff9dceb1c16ef *man/asLeaf.Rd
8a53c6d31ef24a34d916d882f42a811a *man/asPhylo.Rd
79009acfee4775b6ebc348d4e64386f5 *man/changeTree.Rd
55db3d77827fd884a37f6cff079b077e *man/convertNode.Rd
5ee8a31dda18dc9a1d088dcfdd64f3be *man/countLeaf.Rd
c0d852272f8c5a63a3782bb1434e61dc *man/countNode.Rd
e0a690009ff9c44dfca7fc8e1e99f775 *man/detectLoop.Rd
3300b58f02941d1c76227d5c667004d9 *man/distNode.Rd
c0989e298e668145c0089a0cb746729d *man/dot-all_equal_in_list.Rd
c1251f3ca53f0afad4297c70f495edbb *man/dot-all_have_DNAStringSet.Rd
b2f8efbf30e8add979a22273debeb97e *man/dot-all_have_DNAStringSetList.Rd
3088d4baaa1eefa8510f2c60a4e54361 *man/dot-all_nonnull_in_list.Rd
ada3d3423b875c9ba64c97d8adff09c5 *man/dot-all_null_in_list.Rd
14da6598656919c8d19a579fd1ba13b7 *man/dot-any_null_in_list.Rd
7e78dbce2613c24dd5427bbbe27a6ebf *man/dot-auto_rename_list.Rd
d2d3d218bd058f09048aed64350eef04 *man/dot-bind_link_tree.Rd
8c7ca4640d3b04855c931ef040d4f012 *man/dot-is_equal_link.Rd
b964f4cbe77e3cb5f18eaadeef832b9c *man/dot-match_phylo.Rd
4a1787d30624e1bb13b5e17f3e3a96f5 *man/dot-match_phylo_list.Rd
b2ff65e8518adcd57e3ce17a6ac6a6ca *man/dot-match_x_dupY.Rd
4f732402dcb086583744976737e7d626 *man/dot-name_y_with_x.Rd
57ba4ef57798577adccc5bd6990572a9 *man/dot-numeric_ij.Rd
cefab34110550417826edae9b65d36d8 *man/dot-rbind_refSeq.Rd
7abf31b0bb2da9f110f81393a1c4f93f *man/dot-replace_link_tree_1d.Rd
8663ec8a0f833a8d0885c62234290d80 *man/dot-subset_leaf.Rd
16f8c7e2607f6569706efc906cad985d *man/dot-update_whichTree.Rd
b77215da97b782d4e03e8835f860ceb8 *man/findAncestor.Rd
1973b6f7f6ab07589f8ead2a6624be2e *man/findChild.Rd
5de4e032e3ce5fc6635cb63bd0138c4c *man/findDescendant.Rd
ddee4539c6e841ab5c5979b6fb71ec2b *man/findSibling.Rd
b6457e5af7d1592e96f5bd4df850ac0b *man/isLeaf.Rd
9a066b95b17aa02bc9f401af46f64b60 *man/joinNode.Rd
abf28a0c3f05c486f2df2f3547782b72 *man/makeTSE.Rd
788b22ead3fc960491289217f51b01a9 *man/matTree.Rd
2fd44f2a72fa016b2951f78014185a78 *man/phylo.Rd
58d5452e0deb5e0c4dcb7e569745450f *man/printNode.Rd
503a5dcdf30ffad54a5c2de3d64a5496 *man/resolveLoop.Rd
2b76fa48a16e77a6800abf93dd0c2360 *man/shareNode.Rd
df397205485d5db06973636a388f9f27 *man/showNode.Rd
a4df938fd66a8612d94b3e8498fdb19f *man/tinyTree.Rd
aeb99f7fb632535ad774c4459a2ad3f9 *man/toTree.Rd
50f55ed294b9c6465abf411a4d9a8573 *man/trackNode.Rd
641dc3f6af8df8c053bb89a86eef8578 *man/unionLeaf.Rd
d7dd17896b45b1f971d2de1394d4b6ef *man/updateObject-TreeSummarizedExperiment-method.Rd
ecf1e787ab60e49bacb221fc10688375 *tests/testthat.R
5fe1181de4fcd9fee27518c6a5af44f3 *tests/testthat/test-Accessor-Constructor-subset.R
8056aa033148324d6151ad6ccf8726cb *tests/testthat/test-Accessor-Constructor.R
1f68cc2309c7db44cdc61d77340d8f03 *tests/testthat/test_addLabel.R
fb80ace51aaf4800f126111130daa780 *tests/testthat/test_aggTSE.R
4a85dfadc63321ce23ebb4797498e826 *tests/testthat/test_asPhylo.R
55d14ca0790237ef36b926c194e9fa10 *tests/testthat/test_changeTree.R
4ecd80187c9429750cbcd1eaf31f12af *tests/testthat/test_combine.R
d01a1ce2ea7c8554560ae44cfab6255b *tests/testthat/test_dimTree.R
020d0be9029610d3050b884480f25180 *tests/testthat/test_subsetByLeaf.R
18c346b117ade32089a9b402fc4a79e2 *tests/testthat/test_subsetByNode.R
c0c765e6ca7e64d0d10b260b6fafe638 *tests/testthat/test_tree.R
0672ffdcaaa96e94727034d4cd169b8f *tests/testthat/test_tree_asLeaf.R
f602cb698a068e5c38c0de5cb480fe9d *tests/testthat/test_tree_convertNode.R
93828d70e4369cdec223f40a0eb562a6 *tests/testthat/test_tree_findDescendant.R
7c9283e4ea19bd7fba3db99df6c9a527 *tests/testthat/test_tree_isLeaf.R
b0d6791ec2bdac068ab0c82699303421 *tests/testthat/test_tree_matTree.R
02af9f016105d3719f73b7cdbfa799b0 *tests/testthat/test_tree_setters.R
fee8182fd0e93a6d80aef0c0c46126ea *tests/testthat/test_tree_toTree.R
d64c658ba6b7164bc9a687ae074cf583 *vignettes/Introduction_to_treeSummarizedExperiment.Rmd
a80c2db8dd0c08b7626c73ea859df3a2 *vignettes/The_combination_of_multiple_TSEs.Rmd
30790a32ee6bf32d7de87e60946cd196 *vignettes/TreeSE_vignette.bib
5a0c9380feb9d13e5caf5d826df3b48d *vignettes/tse.png
c959cec09045b85c99ff8289a6b5968f *vignettes/tse.svg
b99d908b5c7e7c8526c65c8869350678 *vignettes/tse2.png
691cbec24fa6943182e0abe1f92c8b0e *vignettes/tse2.svg
