d53f537d3ebbaf95678c1bbd411ce7e6 *DESCRIPTION
cd14cfa59bdd942714fc32c32b77c093 *NAMESPACE
db55cb9d5508a3ba338fcccabf3820c0 *NEWS
76525724263c0f3e9328a416b821fef7 *R/main_splinter.R
77c858dda9ee032d0824a9ffa6618664 *R/primerpcr.R
4ef9cbb2877ae1422b0ad1b81f76f710 *SPLINTER.Rproj
45973b8adbf7637b2a2e4cb75ffdf84b *build/vignette.rds
de969f4a190563ee32d7f2ffadbfba10 *data/acceptor.m.rda
80836c287ae793343d68c23e6fd78977 *data/compatible_cds.rda
f96aaa25d3e1d8ad831251e12ea5e444 *data/compatible_tx.rda
49645f6e1ceb4b9c9372eba965a41064 *data/donor.m.rda
98f96df0af9bcdf8ca9690f4e5c75b6d *data/pcr_result1.rda
4414eb679bbd1161ed3794200a503125 *data/primers.rda
7e4e231343c6f2e10f9d45ffe3446b4d *data/region_minus_exon.rda
238bc6e91f268a5cf9651aa9f468f525 *data/roi.rda
2a7c97c3ba59cc49f85f7b816efbfaab *data/splice_data.rda
86a38a99b0a815d2c0b9f1d9485c6770 *data/splice_fasta.rda
424a6bcb3ea192a24e3401e4aaf89455 *data/thecds.rda
08c3b186d9b9de07088e1f0e6b4c22cd *data/theexons.rda
12170d4e493796eb8872b6efea3fa0c8 *data/valid_cds.rda
0e7a6e296c9291c37eeb032630f271bb *data/valid_tx.rda
a6f22fc9c6c56eb8b9642bae12e0e5ed *inst/doc/vignette.R
e796da2fd8fe2a57b5a4379030e45f67 *inst/doc/vignette.Rmd
1bcd859efdc9d3f1331fb12975b9a28f *inst/doc/vignette.pdf
aa2c27a13e027b658b89a89e9f560c85 *inst/extdata/Mus_musculus.Ensembl.NCBIM37.65.partial.gtf
ff143b221dbede689f21ddfe6abf66e2 *inst/extdata/mt_chr14.bam
ea98d7116353c4edcb3bee90f1e9920f *inst/extdata/mt_chr14.bam.bai
fc4ca479f13058af8d5db9033033afa9 *inst/extdata/skipped_exons.txt
f5102a0a9bf0adba86a62d40dddda548 *inst/extdata/wt_chr14.bam
7cf8ba8ba82102bdd7ad21460719a646 *inst/extdata/wt_chr14.bam.bai
87805d4eac2a8303a157cca6f3d1d6c1 *man/acceptor.m.Rd
835d971511eca8825de853846711308b *man/addEnsemblAnnotation.Rd
7dd381cff8cb82d6e6d76cd441a39dda *man/annotateEvents.Rd
1b9435705f9b80bcbcffd83b682a7d36 *man/callPrimer3.Rd
41070b59a6041dd48ed5852bb3d80bdd *man/checkPrimer.Rd
193be1190dae52fe3767534789df95a0 *man/compatible_cds.Rd
d91d1d432ba3c764949e898dae6e8c9e *man/compatible_tx.Rd
3e677c81a308c9c89d416e0d8d31bf13 *man/donor.m.Rd
54b17d20afc4ddd5ad6edb0c75206eed *man/eventOutcomeCompare.Rd
47519c2920996ba903ded8bace6366ba *man/eventOutcomeTranslate.Rd
1023adb9c336b9eedb191b46e2a68d82 *man/eventPlot.Rd
4ea08683e1adafcf341d1da1799e5210 *man/extendROI.Rd
63020697fc85b21e3123ae1188aaf748 *man/extractSpliceEvents.Rd
b178944a05cf929fa25e319ab342b55f *man/extractSpliceSites.Rd
03bf78a5011596aa67a73a8cbd42b133 *man/findCompatibleEvents.Rd
1b25db8b1fd03263a7ddf000ba67214f *man/findCompatibleExon.Rd
0d783752e866648621f2551651c964c6 *man/findExactOverlaps.Rd
eafe7e0dc996357bf34574c99492205e *man/findTX.Rd
5ffb5f2e1e1b2921e3afc9027e21bd90 *man/findTermination.Rd
57ad77a57d2a96052f0026097faf0b04 *man/getPCRsizes.Rd
bde324c4546f5ca989e989ee03172588 *man/getRegionDNA.Rd
c3eeb1f302dbef96614db1d77ed2f45a *man/insertRegion.Rd
4148b159fe2fb371ea1ef09b3c955808 *man/makeROI.Rd
d65e3d52c1dbb0159c9431abc43365cc *man/makeUniqueIDs.Rd
648a27fad0722f1740b5c6f14787b0a3 *man/matchExons.Rd
c882eb7c58b9889d9d39d043b9abbc22 *man/metaremove.Rd
3697151fca5956ecc7b7ee974761e050 *man/pcr_result1.Rd
57e6552dfff474f830c03b9b7eb75d90 *man/plot_seqlogo.Rd
8b89f0ce728ef35e21e11a35e7f0d244 *man/primers.Rd
201e0841f77e6688872fd905d509dab7 *man/psiPlot.Rd
6a6c9894dbf1eb5576053825886018fa *man/region_minus_exon.Rd
3aff49cd846a0e8fb0eaa4c34e062448 *man/removeRegion.Rd
4a8ac66a03ce540714817448c73f2338 *man/remvalue.Rd
6491dea33e386ff9b57dedf87f692958 *man/roi.Rd
8ac8d89aa12701e365751200dba434f2 *man/shapiroAcceptor.Rd
091be6eaabfc90e9f92b2a8308c43439 *man/shapiroDensity.Rd
0a2f6e2e54a00a28129b438208fe227d *man/shapiroDonor.Rd
116577a49f2cf1d4da7f9a6361537f4a *man/splice_data.Rd
25ec6160950029aed7ab122bc8ff0e66 *man/splice_fasta.Rd
26227beb3a50e89db69364268e9245fa *man/splitPCRhit.Rd
d4852167d7e0da3e88ec71fab9b237aa *man/thecds.Rd
337c3db0562a867848006979e9d5c225 *man/theexons.Rd
96a88edd849eaff90a13d7d241d2288d *man/valid_cds.Rd
cae4565e0f8b3e5e0042b5981d4994ec *man/valid_tx.Rd
e796da2fd8fe2a57b5a4379030e45f67 *vignettes/vignette.Rmd
