1a23e8ced4d21062a2ca3ba16b43bce8 *DESCRIPTION
1f33ee0947b20c1cac6516fc74fd4cf7 *NAMESPACE
7cd3437a92383a9f8a0f43b1bf3806ac *R/SELEX.R
ac0799cadba02af522e88e6320ac3c89 *R/onLoad.R
cf24c947a0c7955982666cf9462efe1d *build/vignette.rds
0f1ca674ea8dbfcb6076d384a84e8384 *inst/doc/SELEX.R
cd235e2b2e64e79b47e1469e2f685e08 *inst/doc/SELEX.Rnw
7f81baea088cb61befd1c9f724955e6b *inst/doc/SELEX.pdf
61f09be33d05099a42ce3a3b4cd68095 *inst/extdata/R0.fastq.gz
e2d56808fe00e435c8e98ac4e7d88086 *inst/extdata/R2.fastq.gz
89d77aa430bbec1aadc93d6e632b30dd *inst/extdata/config.xml
62cac1901286634e1c9f9245b0206af4 *inst/java/selex.jar
d9ea2cd49afc530162d06cfaddd7cd38 *java/src/Makefile
f3d305cc8c2cff2d184d7c327ccac1bc *java/src/base/ArraysMerger.java
d752bc3e3330d2b23e90663430f60768 *java/src/base/ArraysMergerHeap.java
8650262bcd756f4706d365e79392ab1f *java/src/base/CountObject.java
6074301e6e758548e81134df6337e529 *java/src/base/CountObjectIterator.java
f1d9b065f5ca82c8d983ef7303ab539f *java/src/base/DebugLog.java
6ec45b8841d16a4d642831cca9d5c74f *java/src/base/FatalException.java
009618177ca20afb437529bb408e1b02 *java/src/base/MarkovModelInfo.java
08b4dbd121af08ae2047a6e1184b25ef *java/src/base/MarkovModelOption.java
0b4f7378ba04cfb503252f4515bf792c *java/src/base/QuickSort.java
d64ef6d6bd89419370fb0d135e3161fb *java/src/base/RegexOption.java
d182b0877a084d63983606f2e8bad5a7 *java/src/base/SELEXConfigReader.java
2c495f55461e4907f7edc159e9035e7d *java/src/base/Sequence.java
b3ccd7ce16e44eec86c253f8d1abb036 *java/src/base/SequenceComparator.java
69cee587c91f6d02c18d64cdc1b30430 *java/src/base/Util.java
3d8bfb4ef69545fafc310ca13163b9d4 *java/src/config/AdditionalDataSet.java
3b6d48948eaa1a818569be95e7777773 *java/src/config/CrossValidation.java
d9ad80e921d4e95614d24697661491c5 *java/src/config/CrossValidationSetting.java
70f08d48ed8ed2a747f76decd58d156b *java/src/config/DataSource.java
1588c4341505e56041f21b19d40382b4 *java/src/config/ExperimentReference.java
4583be761fbda5561cf4fa88160eee75 *java/src/config/InformationGain.java
8270b0dd8154d821dd9a8dff6b9c4b19 *java/src/config/InformationGainStats.java
14fd6a90ccdaced697f1d5b5872996fa *java/src/config/InputDataSetStats.java
f7dea04c178f8f77ee1486d10d5114de *java/src/config/KmerCountStats.java
a722c1facf9540085d7210649fda8b4e *java/src/config/MarkovModelStats.java
c759e4c6c6f9e09c9360aaf57a44d63d *java/src/config/Model.java
b1172bf64f92b7d171acf10513e1ab6d *java/src/config/ObjectFactory.java
7e07d67837a40a42a412a1fd47ece17e *java/src/config/Process.java
6b2dc571f9a9464e2ee128311c25fe18 *java/src/config/Round0.java
6b07c978a99cb78e174f153fdfee7c54 *java/src/config/SELEXPipeline.java
35e8dbd076cd748d27612abfbc28a031 *java/src/config/SELEXProcessConfig.java
49448632b6376dbc3fc1e4d579272874 *java/src/config/SELEXSequencingConfig.java
f0bd6d53ef6c38e25f422b59be774975 *java/src/config/SELEXStats.java
53e7932c1af42c780f81baf1f2ea654e *java/src/config/Sample.java
594b86b37474fb4e4e56cf269e8f52e6 *java/src/config/SequencingRunInfo.java
a6f5fc2471b6fff47db237398d6dd705 *java/src/config/Settings.java
68b329da9893e34099c7d8ad5cb9c940 *java/src/data/selex/filelist
29c1ca3c277f05b30d43654cfb0dc3f2 *java/src/jaxb/License.txt
eb74bbfcb6ba1ae09cb9f7e53da6ae8b *java/src/jaxb/ThirdPartyLicenseReadme.txt
755e5c2e29edf94abf93e409bc038426 *java/src/jaxb/xjc.sh
ec20cbe263acc7cac32ad8960fa7da9c *java/src/main/CountFileReader.java
4498773e9627d520ce88c2ea3b19b2dd *java/src/main/FastQFileScanner.java
74d3e1ed80f33738972481bcb5a75278 *java/src/main/SELEX.java
41a6b840ea33ce000262494c002f4490 *java/src/main/SELEXConfigGUI.java
8678c4c576ab9e749fea0e8f8d94a628 *java/src/main/SampleDataFileExtractor.java
517f1344b87da43737fce01540e08ddb *java/src/main/SimpleKmerCount.java
62cac1901286634e1c9f9245b0206af4 *java/src/selex.jar
a32ff6a8d211c0e0f95fa38113b5e701 *java/src/selex.xsd
5032ee35581bab4f76aef0b186293d52 *java/src/test/CountFileReaderTest.java
3ad597667c2390f726ccbb8bed8b921c *java/src/test/ExecutorTest.java
ec07cf3ec60f2c82300b73410b854c46 *java/src/test/IntegerHolder.java
0caff687cc483eb0ed9eae7811b111a0 *java/src/test/Kmer.java
b72033f6f347dba971b105ec99415607 *java/src/test/MappedMemTest.java
a4bd5e662f34832b4f4a511b649f3eec *java/src/test/MinHeap.java
ba5fded93d664808ecf9d5298255fe5b *java/src/test/MinHeapTest.java
e67f48a03a8ade46aaa336c2c8fbe611 *java/src/test/RadixSortTest.java
aa136dede2855b3c5f0c5203a8db3bf5 *java/src/test/RegTest.java
1e330e1a8c4777e0d21daa1c263852ec *java/src/test/SELEXTest1.java
690e39cdd3c34d9309090204152260eb *java/src/test/SELEXTest2.java
836e4c6f22b72c3c16e1c18ebbaa2a3b *java/src/test/SequenceTest.java
b60f91ccc9efa6f17b5a6821c30eab81 *java/src/test/Sorting.java
e14debce9cb422e1bd407702b52e5626 *java/src/test/SortingTest.java
6d78cf2cf8ba9c116a91bd6ac4d58bce *java/src/test/UtilTest.java
fc64c30cf38a129b1738507458baee31 *java/src/test/ZipfileTest.java
b6670248879e5923a75d24f3db86292a *man/SELEX.Rd
0a76a62730195a0ff38b7553d56f1aee *man/selex.affinities.Rd
cf90c2df5a293568679de23793967e0c *man/selex.config.Rd
81c8b0032417ba5943165b99ca64e002 *man/selex.countSummary.Rd
4b10bcaa2af8f4057def9a13a83da9cd *man/selex.counts.Rd
c7005d37bfb40446091911cdd45f889e *man/selex.defineSample.Rd
1867495130dfb3823b2f81823fd65e4a *man/selex.exampledata.Rd
c7ad0dc095bfaaf39fafa8d5a69fe08e *man/selex.fastqPSFM.Rd
0727cf773ca3e4f1209bd7c54a524435 *man/selex.getAttributes.Rd
3ce4be972dd0bf622cf7785fb02a8845 *man/selex.getRound0.Rd
6c7f651a1e372af6ad401784803f31cb *man/selex.getSeqfilter.Rd
54044ee600d5f97e727ced0881da3bc8 *man/selex.infogain.Rd
e55a40744753a861e1f8981145b049e3 *man/selex.infogainSummary.Rd
fcc0e7bb15104651af4e87081b3563ac *man/selex.jvmStatus.Rd
3dbaac47900e8e2ba29d3259dee9dde0 *man/selex.kmax.Rd
881fdab8e9bc30393c91efd44173c553 *man/selex.kmerPSFM.Rd
2b6159850876fe1ff3a34b37c303dfc6 *man/selex.loadAnnotation.Rd
9f0609916391eeda607ff540114eb5aa *man/selex.mm.Rd
4bf8d40895d8a6daae2a92c8d36a7d8b *man/selex.mmProb.Rd
269cdabb702c794b72a5c8e667113397 *man/selex.mmSummary.Rd
1da45e57c64d889c753373ae135c90d3 *man/selex.revcomp.Rd
da7cdb09b4db79bfd3e27856210bd8d3 *man/selex.run.Rd
1c7c16d3c51bd135ec7a53be57b05737 *man/selex.sample.Rd
592bebf36275f18d7650018334f0b94f *man/selex.samplePSFM.Rd
dfed1b1bab164822586d5fd1f326e065 *man/selex.sampleSummary.Rd
6c47f1373712a19fde986fefd43e8006 *man/selex.saveAnnotation.Rd
13587b85d5538d7633283e8038015c82 *man/selex.seqfilter.Rd
0f8f3ff9abc2d46837ab0a212b25ba4f *man/selex.setwd.Rd
80f6a645096d1cb0d4109ef0337ec0bb *man/selex.split.Rd
34caa8a3dfdf0d9b5ab46c34a1d379b6 *man/selex.summary.Rd
cd235e2b2e64e79b47e1469e2f685e08 *vignettes/SELEX.Rnw
